Input parameters:

  Query = AT4G35050.1 (Len=424)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G35050.1, Len=424):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAAEEGKDEAGLDQVEEEFSIWKRNTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPYFAVHKLILGTHTSGGAQDFL 80  
WD40-rpts                                                                            (_________

Query       81 MVADVVIPTPDAEPGLGGRDQEPIVPKVEIKQKIRVDGEVNRARCMPQKPTLVGAKTSGSEVFLFDYARLSGKPQTSECD 160 
WD40-rpts      _______WD 1_______________)                                                   (_

Query      161 PDLRLMGHEQEGYGLAWSSFKEGYLLSGSQDQRICLWDVSATATDKVLNPMHVYEGHQSIIEDVAWHMKNENIFGSAGDD 240 
WD40-rpts      ________________WD 2_________________)(______________________WD 3_______________

Query      241 CQLVIWDLRTNQMQHQVKVHEREINYLSFNPFNEWVLATASSDSTVALFDLRKLTAPLHVLSKHEGEVFQVEWDPNHETV 320 
WD40-rpts      ______)   (_________________WD 4_________________)    (_________________WD 5____

Query      321 LASSGEDRRLMVWDINRVGDEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKDEPWVISSVAEDNSLQVWQMAESIYR 400 
WD40-rpts      _____________)                   (_________________WD 6_________________)       

Query      401 EDDEDEDDDDEGNQNAQHSNENQK 424 
WD40-rpts                              

6 WD40-repeats found in QUERY=AT4G35050.1 (Len=424):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    71-107      3.82  272.36  0.01322       12.5%     -17.82
  WD 2:  Seg  8   159-198      6.17  369.70  0.00065       30.0%     50.79
  WD 3:  Seg 12   199-247      6.13  368.08  0.00068       20.0%     53.07
  WD 4:  Seg 16   251-290      7.10  407.75  0.00020       22.5%     55.62
  WD 5:  Seg 19   295-334      7.08  407.19  0.00020       35.0%     49.80
  WD 6:  Seg 23   354-393      6.57  386.22  0.00039       25.0%     56.04

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   71-107    -----------HTSGGAQDFLMVADVVIPT-PDA-E-PGLGGRDQEPIVPK
   WD 2  159-198    -C--------DPDLRLMGHEQEGYGLAWSS-FKEGY-LLSGSQDQRICLWD
   WD 3  199-247    VSATATDKVLNPMHVYEGHQSIIEDVAWHMKNEN-I-FGSAGDDCQLVIWD
   WD 4  251-290    -N--------QMQHQVKVHEREINYLSFNP-FNEWV-LATASSDSTVALFD
   WD 5  295-334    -T--------APLHVLSKHEGEVFQVEWDP-NHE-TVLASSGEDRRLMVWD
   WD 6  354-393    -P--------ELLFSHGGHKAKISDFAWNK-DEPWV-ISSVAEDNSLQVWQ

   WD40 Template    TG--------ECLRTLSGHTSGVTSVSFSP-DGK-R-LVSGSEDGTIKVWD