Input parameters:

  Query = AT4G35370.1 (Len=433)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G35370.1, Len=433):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTIVALSWIPKEASKAMPVAAESPCMEEKMDDEIQNAQVTHAKSVAKSFGKSKVASSSSTDADEVVKFLKELDMDNYDEE 80  
WD40-rpts                                                                                      

Query       81 DDEIELFSSGQGHLYYPSNDMDPYLKDTDGDYDSEDHDDLTIRPTDSLIICAAIKHEVNYLEVYVYEESENIYLRNDMII 160 
WD40-rpts                                                                                 (____

Query      161 SELPLCTAWLDCPLKGGGKGNFVAIGTMESSIEIWDLDLVCTCATLCTTGTDNSHTGPVIDLAWNKEFRNIVASGSEDKK 240 
WD40-rpts      ______________WD 1_________________)          (_________________WD 2____________

Query      241 VKVWDVATGKCKVTMEHHEKKVHAVAWNNYTPEVLLSGSRDRTVVLKDGRDPSNSGLKWSTEAKVEKLAWDPHSEHSFVV 320 
WD40-rpts      ____)   (_________________WD 3_________________)   (_________________WD 4_______

Query      321 SLKDGTVKGFDTRASDLSPSFIIHAHDSEVSSISYNIHAPNLLATGSADESVKLWDLSNNQPSWIATNKPNAGEVFSVSF 400 
WD40-rpts      __________)(____________________WD 5___________________)(___________________WD 6

Query      401 SADCPFLLAVGGSEGLNVSVGYLIRHCCVPKIW 433 
WD40-rpts      ___________________)             

6 WD40-repeats found in QUERY=AT4G35370.1 (Len=433):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  7   156-196      7.86  439.23  7.5e-05       17.5%     36.95
  WD 2:  Seg 11   207-245      7.87  439.64  7.4e-05       32.5%     37.68
  WD 3:  Seg 14   249-288      8.12  450.28  5.3e-05       32.5%     55.39
  WD 4:  Seg 18   292-331      6.42  379.92  0.00047       20.0%     51.44
  WD 5:  Seg 22   332-376      7.73  433.77  8.9e-05       32.5%     52.86
  WD 6:  Seg 26   377-420      6.21  371.31  0.00062       25.0%     59.40

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  156-196    ND----MIISELPLCTAWLDCPLKGGG-KG-NF-VAIGTMESSIEIWD
   WD 2  207-245    C------TTGTDNSHTGPVI-DLAWNK-EF-RNIVASGSEDKKVKVWD
   WD 3  249-288    -G----KCKVTMEHHEKKVH-AVAWNNYTP-EV-LLSGSRDRTVVLKD
   WD 4  292-331    -P----SNSGLKWSTEAKVE-KLAWDP-HS-EHSFVVSLKDGTVKGFD
   WD 5  332-376    TRASDLSPSFIIHAHDSEVS-SISYNI-HAPNL-LATGSADESVKLWD
   WD 6  377-420    LSNNQPSWIATNKPNAGEVF-SVSFSA-DC-PF-LLAVGGSEGLNVSV

   WD40 Template    TG----ECLRTLSGHTSGVT-SVSFSP-DG-KR-LVSGSEDGTIKVWD