Input parameters:

  Query = AT4G35560.1 (Len=1049)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT4G35560.1, Len=1049):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVKKLVEIAAKKPGGSSSEGLRANDVEPRIALHYGIPSGSHLFAYDPFQKILAVSTKDGRIKLFGKDQTQALLVSEETS 80  
WD40-rpts                                        (_____________WD 1_____________)  (___________

Query       81 TSRFLEFVQNQGILLNVNSKNQIEVWDLDKKLLSHVHVFNGEITSFRVMQHTPYFYVGDSSGNVSVFKIEQDSNQVIQLE 160 
WD40-rpts      ______WD 2________________)  (_________________WD 3________________)            

Query      161 YTIPYLASNGSPIEASEDTSVVSILPQLTAESKRILLVFSSGFIALWDIKESKPILKTGVHGMVKQDTKKATCACWVCPS 240 
WD40-rpts               (_________________WD 4________________)(______________________WD 5_____

Query      241 GSRVSVGYSNGDILIWSIPSKGECSPESSAMICKLNLGYKSEKIPIASLKWVYAEGKASRVYVIGSSSNSLQVVLLNEQT 320 
WD40-rpts      ________________)                  (_________________WD 6_________________)     

Query      321 ETRMIKLGLHVSEPCADMEMIIADVNEQSKHKQDFLFVLGKSGRVYAYDDYMIEKYLIQSQSKSSPSLPKETVVKLPFSD 400 
WD40-rpts                                                                            (_________

Query      401 SSSITVGKFLTNPSHLLNLSDEDYAQLAKDAVPFLPFHTVPKESSRSAHFPGFTKVKNVYITGHCDGTISVWDMTCSFPI 480 
WD40-rpts      ________WD 7________________)(___________________WD 8___________________)       

Query      481 LVLFLKEQIDQDVSSRGNAALTALHYDSNSRLLVSGDHNGMVRLYRFKPEPYLTENSFIPFQGSLKKGNNHIVQSVKYIK 560 
WD40-rpts             (_________________WD 9________________)             (____________________

Query      561 LTGSITCIQKSQNSKHLAIGSDQGHVSLVDIEEANVLYTKHIASDICPGIISLQFESCIVQGFEKNVLVVAMRDSSVFAL 640 
WD40-rpts      ___WD10______________________)           (_________________WD11_________________

Query      641 DSDTGNMIGTNMIKPKKPFKVLYMQILDGKQDTSGNGFDTSRESTVEEISIRQPSVLVCSEKAIYIYSLAHVVQGVKKVL 720 
WD40-rpts      )                                                                              (

Query      721 HKKKFSSSPICSASTFYGTSGVGLTLVFTDGTVEIRSLPELSQLKQTSIRGFTYSSPKPNSLPEITISASWDGDLVMVNG 800 
WD40-rpts      ________________WD12________________)                                           

Query      801 DDELIVSSVLPQKETFRLVESMNRVYKKDNSVCHEGIITSSSPREKKSMFGSVFKTKSKRTTDTEPESSKETIEELSKIF 880 
WD40-rpts                                                                                      

Query      881 STANFPWNNNVENSREINTITRVEDEEELDIDDIDIDDHHPNQQQQEKPKEQGILSGLSKQKMANRFSNFKGKLKQMAAK 960 
WD40-rpts                                                                                      

Query      961 NEKSVVTNDEKHEEKNGATVDQIKKKYGFTSSDEMGAAKMAQSKLQDNLKKLQGISLRTTEMEDTAKSFSSTAKELLNAV 1040
WD40-rpts                                                                                      

Query     1041 EFNKQSSKS 1049
WD40-rpts               

12 WD40-repeats found in QUERY=AT4G35560.1 (Len=1049):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    35-66       5.09  324.74  0.00261       25.0%     42.32
  WD 2:  Seg  5    69-107      6.11  367.23  0.00070       22.5%     56.05
  WD 3:  Seg  9   110-148      5.50  341.97  0.00153       15.0%     55.94
  WD 4:  Seg 14   170-208      4.65  306.60  0.00459       17.5%     39.84
  WD 5:  Seg 18   209-257      5.57  344.80  0.00140       20.0%     50.89
  WD 6:  Seg 23   276-315      4.62  305.69  0.00472       12.5%     31.25
  WD 7:  Seg 31   391-429      5.09  324.96  0.00260       12.5%     31.37
  WD 8:  Seg 34   430-473      6.27  373.73  0.00057       22.5%     23.67
  WD 9:  Seg 37   488-526      6.72  392.07  0.00032       17.5%     47.81
  WD10:  Seg 41   540-590      6.17  369.56  0.00065       22.5%     56.48
  WD11:  Seg 46   602-641      4.54  302.38  0.00523       10.0%     24.09
  WD12:  Seg 55   720-757      4.80  313.02  0.00376       17.5%     36.36

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   35-66     --------------------------------YGIPSGSHLFAYDPFQKILAVSTKDGRIKLFG
   WD 2   69-107    -Q----T-----------QA---------LLVSEETSTSRFLEFVQNQGILLNVNSKNQIEVWD
   WD 3  110-148    -K----K-----------LL---------SHVHVFNGEITSFRVMQHTPYFYVGDSSGNVSVFK
   WD 4  170-208    -G----S-----------PI---------EASEDTSVVSILPQLTAESKRILLVFSSGFIALWD
   WD 5  209-257    IK----E-----------SKPILKTGVHGMVKQDTKKATCACWVCPSGSRVSVGYSNGDILIWS
   WD 6  276-315    NL----G-----------YK---------SEKIPIASLKWVYAEGKASRVYVIGSSSNSLQVVL
   WD 7  391-429    -E----T-----------VV---------KLPFSDSSSITVGKFLTNPSHLLNLSDEDYAQLAK
   WD 8  430-473    DAVPFLP-----------FH---------TVPKESSRSAHFPGFTKVKNVYITGHCDGTISVWD
   WD 9  488-526    -Q----I-----------DQ---------DVSSRGNAALTALHYDSNSRLLVSGDHNGMVRLYR
   WD10  540-590    PF----QGSLKKGNNHIVQS---------VKYIKLTGSITCIQKSQNSKHLAIGSDQGHVSLVD
   WD11  602-641    IA----S-----------DI---------CPGIISLQFESCIVQGFEKNVLVVAMRDSSVFALD
   WD12  720-757    LH----K----------------------KKFSSSPICSASTFYGTSGVGLTLVFTDGTVEIRS

   WD40 Template    TG----E-----------CL---------RTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD