Input parameters:

  Query = AT5G02430.1 (Len=905)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G02430.1, Len=905):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MANRGGENGKLDRKKTMTMNWAGLGEFEDDDDHFFDSSNRISTVVPSDLASSSDEEEGEFDDCRISFSSNVSSSSRAAPA 80  
WD40-rpts                                                                                      

Query       81 PDMSPDYDIWMSAPGSITERRRRLLNGMGLESKKTRLGAISIQRVSEPVAATGECSGSRVAEVKVEESDHNSPVNQRVRR 160 
WD40-rpts                             (_________________WD 1________________)                  

Query      161 SPSMSVLLVRSRSDSDIEASSAEKQRKEEMLGKTSKSRLTRTASAIGAPCARICPYFTQTQASPPDAPNGHHQSQGQRSG 240 
WD40-rpts                                                                                      

Query      241 PLLSSVVSNTRFSAFFLIKNLDTGKEFIVKEYGENGMWNRLSDLQTGKQLTMEEFEKSVGYSSVVKDLMRRENANSTMDF 320 
WD40-rpts                                                    (______________________WD 2_______

Query      321 RKFNSYVSKSLRVSKKRGAALLKNIKDVAHSMSSSKVSEKEKDSTGSGTSSPKVAEKNNEQANQWVKVRHSGKSHKDLSA 400 
WD40-rpts      ______________)         (____________________WD 3____________________)          

Query      401 LHMCQEIQAHQGGIWTMKFSPDSHLLASAGEDCAIHVWEVQECEIMSMNEGSLTPIHPSMSGSTDKSSEGDAAEVSQDKK 480 
WD40-rpts          (_______________WD 4______________)(_________________WD 5________________)  

Query      481 KKGKTSMSKKGNQIPDYVHAPETVFSLSDKPICSFTGHLDDVLDLSWSRSQLLLSSSMDKTVRLWDIETQSCLKLFAHND 560 
WD40-rpts                                  (________________WD 6________________)  (___________

Query      561 YVTCVQFNPLDEDYFISGSLDAKIRIWNISNRQVVEWNDLKEMVTAVCYTPDGQAAFVGSINGHCRLYSAEDCKLEQTNQ 640 
WD40-rpts      ______WD 7_________________)  (_________________WD 8________________)           

Query      641 IDLQNKKKAQAKKITAFQFSPINPSEVLVTSADSRIRVLDGTELVQKFRGFKNMNSQMTASYTVDAKHIVCASEDSQVYV 720 
WD40-rpts      (_________________WD 9_________________)(__________________WD10_________________

Query      721 WKHEEPRLGITGRKTVTMCTSYETFPCKDVSVAVPWNGVVKGEPPSTQHQSKRNPKKPSTTTTTPENTTTGKKSGLPPLP 800 
WD40-rpts      _)   (_________________WD11________________)(_________________WD12______________

Query      801 KKNNDGTADGATEQHQEDDPATHISHNESENNTGESIKHGDSPSISISSRISSWSWFDSSGSHGTHSVQPTAWGMVIVTA 880 
WD40-rpts      __)           (______________WD13______________)   (_________________WD14_______

Query      881 TIKGQIRTYQNFGLPRRVGRQGSLF 905 
WD40-rpts      _________)               

14 WD40-repeats found in QUERY=AT5G02430.1 (Len=905):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   104-142      3.68  266.76  0.01572       10.0%      0.43
  WD 2:  Seg  6   287-335      2.85  232.50  0.04486       15.0%     19.24
  WD 3:  Seg  9   345-390      5.58  345.27  0.00138       12.5%     24.00
  WD 4:  Seg 11   405-439      8.70  473.91  2.5e-05       32.5%     45.95
  WD 5:  Seg 14   440-478      6.13  367.69  0.00069       22.5%     28.57
  WD 6:  Seg 20   509-546      7.60  428.47  0.00010       30.0%     51.99
  WD 7:  Seg 24   549-588      7.78  435.88  8.3e-05       35.0%     53.76
  WD 8:  Seg 28   591-629      7.78  435.87  8.3e-05       22.5%     55.54
  WD 9:  Seg 33   641-680      6.59  386.68  0.00038       22.5%     47.63
  WD10:  Seg 36   681-722      7.82  437.68  7.9e-05       27.5%     53.81
  WD11:  Seg 40   726-764      5.89  357.89  0.00093       17.5%     44.24
  WD12:  Seg 44   765-803      4.20  288.05  0.00815        5.0%      3.38
  WD13:  Seg 46   815-848      3.80  271.68  0.01351        7.5%     25.02
  WD14:  Seg 49   852-890      7.15  410.04  0.00019       20.0%     46.93

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  104-142    LLN------GM-GLES--KKTRLGA-----------ISIQR-VSEPVAATGECSGSRVAE
   WD 2  287-335    -GK------QLTMEEF--EKSVGYSSVVKDLMRRENANSTM-DFRKF-NSYVSKSLRVSK
   WD 3  345-390    IKDVAHSMSSSKVSEK--EKDSTGS-----------GTSSP-KVAEKNNEQANQWVKVRH
   WD 4  405-439    -----------QEIQA--HQGGIWT-----------MKFSP-DSHLLASAGEDCAIHVWE
   WD 5  440-478    VQE------C-EIMSM--NEGSLTP-----------IHPSM-SGSTDKSSEGDAAEVSQD
   WD 6  509-546    -DK------PICSFTG--HLDDVLD-----------LSWS--RSQLLLSSSMDKTVRLWD
   WD 7  549-588    -TQ------SCLKLFA--HNDYVTC-----------VQFNPLDEDYFISGSLDAKIRIWN
   WD 8  591-629    -NR------QVVEWND--LKEMVTA-----------VCYTP-DGQAAFVGSINGHCRLYS
   WD 9  641-680    -ID------LQNKKKA--QAKKITA-----------FQFSPINPSEVLVTSADSRIRVLD
   WD10  681-722    GTE------LVQKFRGFKNMNSQMT-----------ASYTV-DAKHIVCASEDSQVYVWK
   WD11  726-764    -PR------LGITGRK--TVTMCTS-----------YETFP-CKDVSVAVPWNGVVKGEP
   WD12  765-803    -PS------TQHQSKR--NPKKPST-----------TTTTP-ENTTTGKKSGLPPLPKKN
   WD13  815-848    ------------HQED--DPATHIS-----------HNESE-NNTGESIKHGDSPSISIS
   WD14  852-890    -SS------WSWFDSS--GSHGTHS-----------VQPTA-WGMVIVTATIKGQIRTYQ

   WD40 Template    TGE------CLRTLSG--HTSGVTS-----------VSFSP-DGKRLVSGSEDGTIKVWD