Input parameters:

  Query = AT5G05150.1 (Len=374)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G05150.1, Len=374):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNSIVSTVRGILTLSRSETFDSPRDEAKSDLKVLSVAWNQVCSGFIVGTNHGFNVYSCKPMIKKSISRAPHESGFKVAEM 80  
WD40-rpts                         (________________WD 1________________)          (____________

Query       81 LFLSNLFAFVGNGYNNSEYPPNKVFVWDDYRNCCLSELTFKSEVIAVKLAREHVVVVLKQNIYVYTFNNLKVDRVIETLM 160 
WD40-rpts      ______WD 2_________________)                                         (__________

Query      161 NPKGLCCVTHVESKAVLACPGFHPGQVQVHDLRWNVIKFIKAHDSAIACMTLTLDGSLLATASTKGTLIRIFNAVDGTLL 240 
WD40-rpts      ________WD 3__________________)  (_________________WD 4_________________)   (___

Query      241 QEFRRGVERAEIYNVAISSNLKWVAASSEKGTLHVFRLRPDILSFDPASSSSFIRVILPKYLYENERSFAQFSLPASTKF 320 
WD40-rpts      _______________WD 5_________________)                            (______________

Query      321 IVGFGSENTVLLVGIDGSFRRCKFDHADGGQMVELEHKYFFSLQETGNTMVGGV 374 
WD40-rpts      ___WD 6________________)                              

6 WD40-repeats found in QUERY=AT5G05150.1 (Len=374):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    20-57       3.99  279.62  0.01057       15.0%     37.93
  WD 2:  Seg  6    68-108      3.31  251.53  0.02510       10.0%      6.43
  WD 3:  Seg 13   150-191      3.69  267.26  0.01548       20.0%     46.57
  WD 4:  Seg 17   194-233      7.27  414.78  0.00016       22.5%     55.35
  WD 5:  Seg 21   237-277      5.96  360.68  0.00086       25.0%     53.42
  WD 6:  Seg 26   306-344      2.87  233.38  0.04367       15.0%     50.93

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-57     -FDSPRDEA-K--SDL--KVLSVAWNQVCSGFI-VGT-NHG-FNVYS
   WD 2   68-108    RAPHESGFKVA--EML--FLSNLFAFVGNGYNN-SEYPPNK-VFVWD
   WD 3  150-191    -LKVDRVIE-T--LMNPKGLCCVTHVESKAVLACPGFHPGQ-VQVHD
   WD 4  194-233    -WNVIKFIK-A--HDS--AIACMTLTLDGSLLA-TASTKGTLIRIFN
   WD 5  237-277    -GTLLQEFR-RGVERA--EIYNVAISSNLKWVA-ASSEKGT-LHVFR
   WD 6  306-344    -ERSFAQFS-L--PAS--TKFIVGFGSENTVLL-VGIDGSF-RRCKF

   WD40 Template    TGECLRTLS-G--HTS--GVTSVSFSPDGKRLV-SGSEDGT-IKVWD