Input parameters:

  Query = AT5G05570.2 (Len=1099)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G05570.2, Len=1099):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MFVRKFLQKSSGGQNPPPPIAPPPRGCLMAEDLDPHIITHSGIPSTASLLAFDPIQCLLAVGTLDGRIKVIGGDNIEAIL 80  
WD40-rpts                                             (______________WD 1_____________)  (_____

Query       81 ASPKQLPFKNLEFMQNQGFLVSISNENEIQVWDLDLRQPASSLKWESNITAFAILHGTGYMYVGDEYGMVSVLNYSADEG 160 
WD40-rpts      ____________WD 2________________)       (______________WD 3______________)      

Query      161 KLLQLPYYVPTDALSEAAGLSSPIDYPVVGLLSQPCSKGTRLLIAFSNGLLFLWDASEDHVVLVRGNKDLPVEGKTVADS 240 
WD40-rpts                     (_________________WD 4_________________)          (______________

Query      241 LEASHDELSNLELDGKEISSLCWASTDGSVLAVGYVDGDILFWDFSDGQKGKPSNHVVKLQLSSAEKRLPVIVMHWCLDV 320 
WD40-rpts      _____________WD 5__________________________)                                    

Query      321 SRKSSGGKLFIYGGDIIGSDEVLTMLGLDWSSGMGGLKCVGRADLTLSGSFADMVLSPIASSRQSGVFLFLLTNPGQLQA 400 
WD40-rpts                                                                    (_________________

Query      401 YDDTSLASLMSQKENKISVSPLPYPMVVPTMDPHMTVATFSALNVNDKTSLALSEIVLAAKARTPRTPSGESAQWPLTGG 480 
WD40-rpts      WD 6________________)                                       (___________________

Query      481 VPSHVDDYKLERLYMAGYQDGSMRIWDATYPCLSLIYILEPKASVIDITGVDASVTAFCFCSKTSCLAVGNECGMVRLYK 560 
WD40-rpts      __WD 7____________________)            (__________________WD 8_________________)

Query      561 LVGHTSGGTLEVVTNTEKKAHHLHQEDGPQWLAAFSFLSSPVCTLQFVQSTRRLAVGFKCGKVAVLDIGVPSVLFVTNSL 640 
WD40-rpts                                  (_________________WD 9________________)             

Query      641 SDSGSPIKSLYVKSSSAPTGSKSDPTDHNSINSEDDLLLCAMTKDGQTILLDGNTGKILASCLRPLKNPTAICMHIIENC 720 
WD40-rpts                   (_________________WD10________________)                            

Query      721 YENYETPSEKPAENPSGKDKHENKSHIIKASESHSPDGEQNAVTETKLIDQIFANSLFLMCSEDALRLYTVKSLSQGSLE 800 
WD40-rpts                                                                                      

Query      801 SIMEVNLPRPCCWMGILKKDGRECAVLLFYRTGHIEIRSFPNLEVVGESSLLSLLRWNFKPNMEKTVCSDDFGHVVLVNG 880 
WD40-rpts                                                                                      

Query      881 CEVAILSFLAHANGFRLPESLPLLHDKVLAAAADATFSHISVHKKNHDGAPKFLSNIIKGFRSSTEQKMDQVQDFSHLGN 960 
WD40-rpts                                                                                      

Query      961 IFSNPPYLKPSDTGGDDEKIVELNIDDIEIDEPVIILPLTEKDKKEKKDKRTDKEKLFDGASSDAQPKTRTVDEIKSKYR 1040
WD40-rpts                                                                                      

Query     1041 KAGETSAIASQAKDKLHERGEKLERISQRTAELQDNAENFASMAHELAKQMEKRKWWNI 1099
WD40-rpts                                                                 

10 WD40-repeats found in QUERY=AT5G05570.2 (Len=1099):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    40-72       4.69  308.56  0.00432       30.0%     42.92
  WD 2:  Seg  5    75-113      5.37  336.62  0.00181       25.0%     58.06
  WD 3:  Seg  9   121-154      3.55  261.43  0.01852       15.0%     50.10
  WD 4:  Seg 13   176-215      3.79  271.26  0.01368       17.5%     29.38
  WD 5:  Seg 17   226-284      4.50  300.71  0.00550       32.5%     46.93
  WD 6:  Seg 26   383-421      3.23  247.90  0.02804       10.0%     18.79
  WD 7:  Seg 30   461-507      5.10  325.38  0.00256       25.0%     22.88
  WD 8:  Seg 33   520-560      5.63  347.29  0.00130       20.0%     53.83
  WD 9:  Seg 38   589-627      5.75  352.27  0.00111       27.5%     52.44
  WD10:  Seg 44   654-692      2.80  230.48  0.04768       20.0%     10.03

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   40-72     --------------------------HSGIP-------STASLLAF-DPIQCLLAVGTLDGRIKVIG
   WD 2   75-113    -N------------------IE-AILASPKQ-------LPFKNLEF-MQNQGFLVSISNENEIQVWD
   WD 3  121-154    -------------------------SSLKWE-------SNITAFAI-LHGTGYMYVGDEYGMVSVLN
   WD 4  176-215    EA------------------AG-LSSPIDYP-------VVGLLSQP-CSKGTRLLIAFSNGLLFLWD
   WD 5  226-284    GNKDLPVEGKTVADSLEASHDE-LSNLELDG-------KEISSLCWASTDGSVLAVGYVDGDILFWD
   WD 6  383-421    -R------------------QS-GVFLFLLT-------NPGQLQAY-DDTSLASLMSQKENKISVSP
   WD 7  461-507    KA------------------RT-PRTPSGESAQWPLTGGVPSHVDD-YKLERLYMAGYQDGSMRIWD
   WD 8  520-560    EP------------------KASVIDITGVD-------ASVTAFCF-CSKTSCLAVGNECGMVRLYK
   WD 9  589-627    -P------------------QW-LAAFSFLS-------SPVCTLQF-VQSTRRLAVGFKCGKVAVLD
   WD10  654-692    -S------------------SS-APTGSKSD-------PTDHNSIN-SEDDLLLCAMTKDGQTILLD

   WD40 Template    TG------------------EC-LRTLSGHT-------SGVTSVSF-SPDGKRLVSGSEDGTIKVWD