Input parameters:

  Query = AT5G05970.2 (Len=782)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G05970.2, Len=782):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MMSNLVEPSWRLLAASGGDTVKLFDVSADSGDPCVLSYTPSPGCAVNSVKWNHTNLVVASTGEDKKISLWRKNGQSLGTV 80  
WD40-rpts                                       (________________WD 1________________)         

Query       81 PVTGKDGGDSAEECLSAISFSKKGSRYICSGGTGQIVKIWDLQRKLCIKKLKGHTSTITGVMYNCKDEHLASVSVGGDLI 160 
WD40-rpts       (_________________WD 2_________________)   (_________________WD 3______________

Query      161 VHNLASGARATELKDPNGQVLRLLDYSRSSRHLLVTAGDDGTVHLWDTTGRSPKMSWLKQHSAPTAGVCFSPSNEKIIAS 240 
WD40-rpts      __)   (__________________WD 4_________________)    (_________________WD 5_______

Query      241 VGMDKKLYTYDSGSRRSSSCIAYEAPFSSLAFGDNGYILVAGTSNGRVVFYDIRGKPQPVTVLHAFSNSEDVTSLSWQTS 320 
WD40-rpts      __________)(__________________WD 6_________________)      (________________WD 7_

Query      321 KPVIVNEKNYTSEMALLGSTVEDSVVIPDPLPSTTPSASQSAMAPGSRGVSASTVNASSVEQTPNRNHLWPSGPLGRLHA 400 
WD40-rpts      _______________) (____________________WD 8____________________)                 

Query      401 LRANDSYNDDMGVFSPIIDVSSVEKWADSEGYNNKDHLVVDNKPSSLLFPSSSKGYSFGDNGSKEHPIFDWKPSSTSKQD 480 
WD40-rpts                                    (__________________WD 9__________________)        

Query      481 DPRAAFSSFGSITPTASSKSEDSALTPPEAWGGDKFSEKFNQLANEKFSDKFSHLHAPSRLAVSSTGASTSGSMFSSSRD 560 
WD40-rpts              (______________________________WD10______________________________)   (__

Query      561 FPLSHGQTNFANASLEFPRIRDFSSTFETSSTQTDNNLPSSPLFTKGITAPGNIDSLRLSPNFTRRFSTYAERISTTSSF 640 
WD40-rpts      _______________WD11________________)              (_________________WD12________

Query      641 SDGASLSLGGSPKIKKTGSETREEVLNHLLARPETVVATEAGAMPLMNQGGLKQSQTDQQQVMGSSNFTLQLFQRTLEGT 720 
WD40-rpts      ________)                                                                       

Query      721 LDSFQNSIHDDVRNLHIEILRQFHMHEMEMSKVLSSILENQAEQMKELKLLRKENQELRQRL 782 
WD40-rpts                                                                    

12 WD40-repeats found in QUERY=AT5G05970.2 (Len=782):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4    34-71       7.52  425.22  0.00012       22.5%     48.03
  WD 2:  Seg  8    82-121      7.15  410.05  0.00019       25.0%     37.34
  WD 3:  Seg 11   125-163      9.23  495.92  1.3e-05       32.5%     57.22
  WD 4:  Seg 15   167-207      6.41  379.32  0.00048       27.5%     46.05
  WD 5:  Seg 18   212-251      7.41  420.63  0.00013       25.0%     53.17
  WD 6:  Seg 22   252-292      8.38  460.89  3.8e-05       22.5%     54.68
  WD 7:  Seg 26   299-336      4.95  319.29  0.00310       15.0%     45.98
  WD 8:  Seg 30   338-383      4.81  313.25  0.00373        7.5%      4.31
  WD 9:  Seg 35   431-472      4.75  310.92  0.00401       20.0%     -0.26
  WD10:  Seg 37   489-554      4.67  307.70  0.00443       12.5%     24.52
  WD11:  Seg 39   558-596      3.79  271.22  0.01370       12.5%      0.05
  WD12:  Seg 40   611-649      4.04  281.48  0.00998       12.5%     20.68

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   34-71     C---------V--------------------------LSYTPSPGCAV-NSVKWNHTN-LV-V---ASTGEDKKISLWR
   WD 2   82-121    -V------T-G--------------------------KDGGDSAEECL-SAISFSKKG-SRYI---CSGGTGQIVKIWD
   WD 3  125-163    -K------L-C--------------------------IKKLKGHTSTI-TGVMYNCKD-EH-L---ASVSVGGDLIVHN
   WD 4  167-207    -G------A-R--------------------------ATELKDPNGQVLRLLDYSRSS-RHLL---VTAGDDGTVHLWD
   WD 5  212-251    -S------P-K--------------------------MSWLKQHSAPT-AGVCFSPSNEKI-I---ASVGMDKKLYTYD
   WD 6  252-292    SG------SRR--------------------------SSSCIAYEAPF-SSLAFGDNG-YI-L---VAGTSNGRVVFYD
   WD 7  299-336    -P------V-T--------------------------VLHAFSNSEDV-TSLSWQTSK-PV-I---VNEK-NYTSEMAL
   WD 8  338-383    GSTVEDSVV-I--------------------------PDPLPSTTPSA-SQSAMAPGS-RG-V---SASTVNASSVEQT
   WD 9  431-472    -G------Y-N--------------------------NKDHLVVDNKP-SSLLFPSSS-KG-YSFGDNGSKEHPIFDWK
   WD10  489-554    FG------S-ITPTASSKSEDSALTPPEAWGGDKFSEKFNQLANEKFS-DKFSHLHAP-SR-L---AVSSTGASTSGSM
   WD11  558-596    -S------R-D--------------------------FPLSHGQTNFA-NASLEFPRI-RD-F---SSTFETSSTQTDN
   WD12  611-649    -P------G-N--------------------------IDSLRLSPNFT-RRFSTYAER-IS-T---TSSFSDGASLSLG

   WD40 Template    TG------E-C--------------------------LRTLSGHTSGV-TSVSFSPDG-KR-L---VSGSEDGTIKVWD