Input parameters:

  Query = AT5G07590.1 (Len=458)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G07590.1, Len=458):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEFTEAYKQTGPCCFSPNSRYVAVANDYRLVIRDTFSFQVVQLFSCLDKISYIEWALDSEYILCGLYKKPMIQAWSLTQP 80  
WD40-rpts      (______________WD 1______________)  (_________________WD 2_________________)   (

Query       81 EWTCKIDEGPAGISYARWSPDSRHILTTSEFQLRLTVWSLLNTACVHVQWPKHGSKGVSFNQDGKFAAICTRRDCKDYVN 160 
WD40-rpts      _________________WD 3_________________)  (_________________WD 4________________)

Query      161 LLSCQSWEIMGSFAVDTLDLADLEWSPDDSSIVVWDSPLEYKVLIYSPDGRCLFKYQAYECGLGVKTVSWSPCGQFLAIG 240 
WD40-rpts            (__________________WD 5_________________)  (__________________WD 6________

Query      241 SYDQMLRVLNHLTWKTFAEFLHLSTVRAPCSAAIFKEIDEPLQLDMSELSLDENFMPSNYDASEGYISVRYEVMELPVAF 320 
WD40-rpts      _________)                 (_____________________WD 7_____________________)     

Query      321 PFQKPPADKPNPKQGVGLLAWSKDSQYICTRNDSMPTALWIWDMRLLEVAAILVQKEPIRAAVWDPTCTRLLLCTGSSHL 400 
WD40-rpts        (__________________WD 8_________________)(__________________WD 9______________

Query      401 YMWTPSGAFCVCNPLPGFSISDLKWNIDGSCLLLKDKDAFCCATVPSLPESSDYSSDD 458 
WD40-rpts      ___)  (_________________WD10________________)             

10 WD40-repeats found in QUERY=AT5G07590.1 (Len=458):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-34       5.23  330.68  0.00217       12.5%     40.60
  WD 2:  Seg  4    37-76       5.70  350.20  0.00119       12.5%     54.95
  WD 3:  Seg  8    80-119      7.47  423.23  0.00012       22.5%     57.32
  WD 4:  Seg 12   122-160      6.28  374.22  0.00056       17.5%     48.60
  WD 5:  Seg 16   167-207      6.94  401.51  0.00024       15.0%     41.99
  WD 6:  Seg 20   210-250      7.82  437.51  7.9e-05       37.5%     55.90
  WD 7:  Seg 26   268-315      4.76  311.30  0.00396       10.0%     18.74
  WD 8:  Seg 28   323-363      6.50  383.14  0.00043       15.0%     36.00
  WD 9:  Seg 31   364-404      6.94  401.21  0.00024       10.0%     55.05
  WD10:  Seg 35   407-445      6.12  367.43  0.00070       12.5%     50.94

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-34     ------MEFT--------EAYK--QTGPCCFSPNSRYVA--VAN--D--YR-LVIRD
   WD 2   37-76     -SFQ-VVQLF--------SCLD--KISYIEWALDSEYIL--CGLYKK--PM-IQAWS
   WD 3   80-119    -PEW-TCKID--------EGPA--GISYARWSPDSRHIL--TTS-EF--QLRLTVWS
   WD 4  122-160    -NTA-CVHVQ--------WPKH--GSKGVSFNQDGKFAA--ICT-RR--DC-KDYVN
   WD 5  167-207    -WEI-MGSFA--------VDTL--DLADLEWSPDDSSIVVWDSP-LE--YK-VLIYS
   WD 6  210-250    -GRC-LFKYQ--------AYECGLGVKTVSWSPCGQFLA--IGS-YD--QM-LRVLN
   WD 7  268-315    APCS-AAIFKEIDEPLQLDMSE--LSLDENFMPSNYDAS--EGY-IS--VR-YEVME
   WD 8  323-363    -QKP-PADKP--------NPKQ--GVGLLAWSKDSQYIC--TRN-DSMPTA-LWIWD
   WD 9  364-404    MRLLEVAAIL--------VQKE--PIRAAVWDPTCTRLL--LCT-GS--SH-LYMWT
   WD10  407-445    -GAF-CVCNP--------LPGF--SISDLKWNIDGSCLL--LKD-KD--AF-CCATV

   WD40 Template    TGEC-LRTLS--------GHTS--GVTSVSFSPDGKRLV--SGS-ED--GT-IKVWD