WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT5G08390.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT5G08390.1 (Len=839) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT5G08390.1, Len=839): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MNTKRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEGLVAAGAAS 80
WD40-rpts (__________________WD 1_________________)(__________________WD 2____________
Query 81 GTIKLWDLEEAKVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWIVS 160
WD40-rpts ______) (_________________WD 3________________) (_________________WD 4______
Query 161 GGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLATGSADKTVKFWDLETFELIGSGGTETTGVRCLTFNPDGK 240
WD40-rpts __________) (_________________WD 5________________) (________________WD 6___
Query 241 SVLCGLQESLKIFSWEPIRCHDGVDVGWSNLSDMNVHEGKLLGCSYNQNCVGVWVVDLSRTEPMSGGATQSNSHPEKTSG 320
WD40-rpts _____________) (________________WD 7________________) (_________________WD 8
Query 321 SGRDQAGLNDNSSKVILGKLPGSQKVDPLLKETKSLGKLSVSQNSDPLPKDTKSTGRSSVSQSSDPLVKEPKPLGRFSAT 400
WD40-rpts ________________) (_________________WD 9________________)
Query 401 HSSDTVKESRTLSSTGSVSDSPHRVTLTSAPKSASGISTVVPNAAASKRNFGKANPKANPPVVNKEDYFPVIVPRTEPII 480
WD40-rpts (________________WD10________________)
Query 481 EQASESRAELDIIGRTMPYSLQSKAADSRRLSSSRNEPDLPTSSLLERSQSQPIEPITLQDGNTYPSDEGGSWDTAERTN 560
WD40-rpts
Query 561 KESKCRVFGRFNSRSLVRSPPRNHDENSDLISYNANRDSSPTESRKGGRLHSLVLNRERRGRFSNFEGPVSSSSGGNMTA 640
WD40-rpts
Query 641 PNSRPSNMLKQRGNHVPVDQGITSASEEDIVADIMGQHDQFVSSMHSRLAKLQVVRRYWERNDIKNSISSIEKMADNAVI 720
WD40-rpts
Query 721 ADVLLIVNERPEILTLDTCTSLLPLLTALLGSNMDSHLSVCLDLLLKLVRMYGSQIYSSLSAPSSVGVDIEAEQRMERYS 800
WD40-rpts
Query 801 CCFVEFEKIKACLPSLARRGNLVAKTLHELNLTFQEVSS 839
WD40-rpts
 10 WD40-repeats found in QUERY=AT5G08390.1 (Len=839): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-45 7.28 415.37 0.00016 22.5% 51.66 WD 2: Seg 5 46-87 9.52 507.88 8.9e-06 40.0% 55.00 WD 3: Seg 9 91-129 10.37 542.95 3.0e-06 45.0% 55.58 WD 4: Seg 13 133-171 10.76 558.98 1.8e-06 50.0% 55.70 WD 5: Seg 17 175-213 9.35 500.76 1.1e-05 35.0% 55.72 WD 6: Seg 21 217-254 6.90 399.86 0.00025 27.5% 55.07 WD 7: Seg 25 258-295 4.97 319.91 0.00304 17.5% 51.45 WD 8: Seg 29 299-337 5.78 353.26 0.00108 17.5% 43.08 WD 9: Seg 32 343-381 5.27 332.33 0.00207 12.5% 23.17 WD10: Seg 36 427-464 4.02 280.60 0.01025 12.5% -4.63Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-45 RA--YKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWA WD 2 46-87 IGKPNAILSLYGHSSGIDSVTFD-ASEGLVAAGAASGTIKLWD WD 3 91-129 -A--KVVRTLTGHRSNCVSVNFH-PFGEFFASGSLDTNLKIWD WD 4 133-171 -K--GCIHTYKGHTRGVNVLRFT-PDGRWIVSGGEDNVVKVWD WD 5 175-213 -G--KLLHEFKSHEGKIQSLDFH-PHEFLLATGSADKTVKFWD WD 6 217-254 -F--ELIGSGGTETTGVRCLTFN-PDGKSVLCGLQE-SLKIFS WD 7 258-295 -I--RCHDGVDVGWSNLSDM-NV-HEGKLLGCSYNQNCVGVWV WD 8 299-337 -S--RTEPMSGGATQSNSHPEKT-SGSGRDQAGLNDNSSKVIL WD 9 343-381 -S--QKVDPLLKETKSLGKLSVS-QNSDPLPKDTKSTGRSSVS WD10 427-464 LT--SAPKSASGISTVVPNAAAS-KRN--FGKANPKANPPVVN WD40 Template TG--ECLRTLSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD |
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