Input parameters:

  Query = AT5G10940.1 (Len=757)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G10940.1, Len=757):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDNLSFHDGNIFNLLHTRSQDPSHEVDQRMQFHSSLVRRLSQEQELEGHQGCVNALAWNSNGSLLISGSDDLRINIWNYS 80  
WD40-rpts      (________________WD 1________________) (_________________WD 2________________)(_

Query       81 SRKLLHSIDTGHTANIFCTKFVPETSDELVVSGAGDAEVRLFNTSRLSGRAEDDNAIIPSALYQCHTRRVKKLAVEPGNP 160 
WD40-rpts      ___________________WD 3___________________)             (_________________WD 4__

Query      161 NVVWSASEDGTLRQHDFRESTSCPPAGTAHQECRSVLLDLRSGAKRALADPPKQTLSLKSCDISATRPHLLLVGGSDAFA 240 
WD40-rpts      _______________)                            (_________________WD 5______________

Query      241 RLYDRRMLPPLASSRKRMPPPPCVNYFCPMHLSERGRTNLHLTHVTFSPNGEEVLLSYSGEHVYLMNVNNGICSTGIMQY 320 
WD40-rpts      ___)                       (_________________WD 6_________________)   (_________

Query      321 TPGDVDNLFSFSNNLHDVESPPQVSTTPQNGFHRSSNAATVKKCTELVEIAKWSLEEGTDVFYAIEAANEVLDAHSNDIE 400 
WD40-rpts      ________WD 7________________)                                                   

Query      401 SALRHECLCTRAALLLKRKWKNDAHMAVRDCHNARRIDASSFKAHYYMSEALQQLGKCKEALDFATAAQHMNPSDADIVA 480 
WD40-rpts                                       (_________________WD 8________________)        

Query      481 KVESIKRDLQAAGAEKNEETGAGTTRVLSLSDILYRSEANSDSSHDMSRSEREDSDYDEELELDIQTSLSDDEGRDTDSN 560 
WD40-rpts                                                (_________________WD 9________________

Query      561 SMRGSLNLRIHRVGDDKPMENTVDNASSGTASSSQNDRTSYQPEGAIDMKRRYVGHCNVGTDIKQASFLGQRGEYIASGS 640 
WD40-rpts      )            (_____________WD10____________)  (___________________WD11__________

Query      641 DDGRWFIWEKQTGRLMKVLVGDESVLNCIQCHPFDSVVATSGIDNTIKIWSPTASVPSIVAGGSAGPATANVVEVMESNQ 720 
WD40-rpts      ________)   (_________________WD12________________)                             

Query      721 QKLSRNRENPLSVELMQRFRMQEFAEGNFHPFECTQS 757 
WD40-rpts                                           

12 WD40-repeats found in QUERY=AT5G10940.1 (Len=757):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-38       4.89  316.75  0.00335       12.5%     16.06
  WD 2:  Seg  3    40-78       9.51  507.36  9.0e-06       30.0%     50.89
  WD 3:  Seg  7    79-123      6.76  393.82  0.00031       22.5%     47.76
  WD 4:  Seg 11   137-176      6.62  388.20  0.00036       27.5%     51.15
  WD 5:  Seg 16   205-244      4.72  309.51  0.00419       20.0%     40.56
  WD 6:  Seg 21   268-307      8.32  458.39  4.1e-05       17.5%     44.41
  WD 7:  Seg 23   311-349      7.24  413.55  0.00017       17.5%     17.21
  WD 8:  Seg 27   434-472      3.85  273.50  0.01277       10.0%     13.56
  WD 9:  Seg 32   523-561      5.60  346.16  0.00135       10.0%     -4.02
  WD10:  Seg 33   574-604      4.40  296.49  0.00627       10.0%     16.00
  WD11:  Seg 35   607-649      7.37  419.29  0.00014       27.5%     44.81
  WD12:  Seg 39   653-691      8.98  485.61  1.8e-05       25.0%     54.74

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-38     -------MDNLSFHDGNIFNLL----HT-RS--Q--D-PSHEVDQRMQFHSSLVR
   WD 2   40-78     -LS---QEQELEGHQGCVNALA----WN-SN--GSLL-ISGSDDLRINIW----N
   WD 3   79-123    YSSRKLLHSIDTGHTANIFCTK----FV-PETSDELV-VSGAGDAEVRLF----N
   WD 4  137-176    -II---PSALYQCHTRRVKKLA----VE-PG--NPNVVWSASEDGTLRQH----D
   WD 5  205-244    -KR---ALADPPKQTLSLKSCD----ISATR--PHLL-LVGGSDAFARLY----D
   WD 6  268-307    CPM---HLSERGRTNLHLTHVT----FS-PN--GEEV-LLSYSGEHVYLM----N
   WD 7  311-349    -GI---CSTGIMQYTPGDVDNL----FS-FS--NNLH-DVESPPQVSTTP----Q
   WD 8  434-472    -AR---RIDASSFKAHYYMSEA----LQ-QL--GKCK-EALDFATAAQHM----N
   WD 9  523-561    -SS---HDMSRSEREDSDYDEE----LE-LD--IQTS-LSDDEGRDTDSN----S
   WD10  574-604    ------------GDDKPMENTV----DN-AS--SGTA-SSSQNDRTSYQP----E
   WD11  607-649    -ID---MKRRYVGHCNVGTDIKQASFLG-QR--GEYI-ASGSDDGRWFIW----E
   WD12  653-691    -GR---LMKVLVGDESVLNCIQ----CH-PF--DSVV-ATSGIDNTIKIW----S

   WD40 Template    TGE---CLRTLSGHTSGVTSVS----FS-PD--GKRL-VSGSEDGTIKVW----D