Input parameters:

  Query = AT5G12920.3 (Len=554)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G12920.3, Len=554):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRSHKDTPAPTLSYQVVSSPLKAVETGHKVRMDLIKKSKLRYQWRHRRLQFCYLRRVRDLKLGSQGSEDTVRPWKRSLIE 80  
WD40-rpts                       (__________________________WD 1__________________________)     

Query       81 VNGRLDSAYRHELYSRVAHSYSEIGKFSHFYHLNENPCITHMMQIQSLYQCPTMRGVAGLDFDNRGIFLVSVTRSGCLMV 160 
WD40-rpts                (_____________WD 2____________)(__________________WD 3________________

Query      161 HDFESLYCQSKLGPGSAEDESKHVVHFSYPPGREFDVARWNPSNQNEVACTSRKHDQVLIFDISYMSPKPTEKQETQMYR 240 
WD40-rpts      _)                   (_________________WD 4________________)   (________________

Query      241 RISILGNCKIPVPTWFPKSVLQTRQKLSIIGRKISRGLSDVAITSDEDSRIFSPDTLGMVHVWDRRAGVSPCIELSTDRY 320 
WD40-rpts      _WD 5________________)(__________________WD 6__________________)     (__________

Query      321 DSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGGRNSSAFQSRKDMSQLPLASLHLAPKLQKIASLKAQSEIVPKEIHSIDV 400 
WD40-rpts      _______WD 7________________)   (___________________WD 8__________________)      

Query      401 NPSSPHQLAFHLDDGWSGVLDIYKSEVTHVHCPPPAWLDGSNSSADLILRKPSWLPTSSIYVVGSMSEKGIHVLDFHPSS 480 
WD40-rpts                                                               (_________________WD 9_

Query      481 RSPCHVDYDEDTQRNEKRDKCNHRNKFVSLSETVTGCAAHPLNGMIVAGTQNSSLLLIAQMHCSSSSETAEGEL 554 
WD40-rpts      _______________)(___________________WD10__________________)               

10 WD40-repeats found in QUERY=AT5G12920.3 (Len=554):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    18-75       4.74  310.48  0.00407       12.5%     13.59
  WD 2:  Seg  5    91-121      3.84  273.38  0.01281       10.0%     19.90
  WD 3:  Seg  7   122-162      7.19  411.65  0.00018       25.0%     50.66
  WD 4:  Seg 11   182-220      4.80  312.73  0.00379        7.5%     51.22
  WD 5:  Seg 15   224-262      6.59  386.93  0.00038        7.5%     21.62
  WD 6:  Seg 18   263-304      7.12  408.58  0.00019       25.0%     48.51
  WD 7:  Seg 22   310-348      8.25  455.61  4.5e-05       17.5%     51.08
  WD 8:  Seg 26   352-394      5.00  321.02  0.00293       12.5%     18.60
  WD 9:  Seg 32   458-496      6.66  389.59  0.00035       12.5%     27.21
  WD10:  Seg 34   497-539      4.56  303.05  0.00512       12.5%     42.61

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   18-75     SSP---LKAVE-TGHKVRMDLIKKSKLRYQWRHRR----LQFCYLRRV-RDLKLGSQGSEDTVRPWK
   WD 2   91-121    ---------------HEL----------------Y----SRVAHSYSE-IGKFSHFYHLNENPCITH
   WD 3  122-162    MMQ---I-QSL-YQCPTM----------------R----GVAGLDFDN-RGIFLVSVTRSGCLMVHD
   WD 4  182-220    -KH---V--VH-FSYPPG----------------R----EFDVARWNP-SNQNEVACTSRKHDQVLI
   WD 5  224-262    -SY---M--SP-KPTEKQ----------------E----TQMYRRISI-LGNCKIPVPTWFPKSVLQ
   WD 6  263-304    TRQ---K--LSIIGRKIS----------------R----GLSDVAITSDEDSRIFSPDTLGMVHVWD
   WD 7  310-348    -SP---C--IE-LSTDRY----------------D----SIKSIQIYV-DNQTIFGAGKEGIIHIWD
   WD 8  352-394    -GR---N--SS-AFQSRK----------------DMSQLPLASLHLAP-KLQKIASLKAQSEIVPKE
   WD 9  458-496    -SS---I--YV-VGSMSE----------------K----GIHVLDFHP-SSRSPCHVDYDEDTQRNE
   WD10  497-539    KRDKCNH--RN-KFVSLS----------------E----TVTGCAAHP-LNGMIVAGTQNSSLLLIA

   WD40 Template    TGE---C--LR-TLSGHT----------------S----GVTSVSFSP-DGKRLVSGSEDGTIKVWD