WDRR: WD40 Repeat Recognition
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| Pre-calculated Results - Accession: AT5G23430.1 [Arabidopsis thaliana] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = AT5G23430.1 (Len=837) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (AT5G23430.1, Len=837): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
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Query 1 MTTKRAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAAS 80
WD40-rpts (__________________WD 1_________________) (_________________WD 2__________
Query 81 GTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTPDGRWVVS 160
WD40-rpts ______) (_________________WD 3________________) (_________________WD 4______
Query 161 GGEDNIVKVWDLTAGKLLTEFKSHEGQIQSLDFHPHEFLLATGSADRTVKFWDLETFELIGSGGPETAGVRCLSFNPDGK 240
WD40-rpts __________) (_________________WD 5________________) (________________WD 6___
Query 241 TVLCGLQESLKIFSWEPIRCHDGVDVGWSRLSDMNVHEGKLLGCSYNQSCVGVWVVDLSRTEPCMAGDTAQSNGHPEKRS 320
WD40-rpts _____________) (________________WD 7________________)
Query 321 CSGRDPVVLNDNNSKTVLGKLSVSQNVDPLLKETKSLGRLSVSQNSDPSTKETKSIGRSSTSQNSESSMKESKPLGRLSV 400
WD40-rpts (_________________WD 8_____
Query 401 SQNSDVSKESRTFSSTGSLPGTPHRVSSTNVSKATSGVSTAVSNAATSRRNFTKANPKANPVNKAADFAPVIVPRADPRI 480
WD40-rpts ___________)(_________________WD 9________________) (_________________WD10____
Query 481 EQATESRAELDIIARTMPYSLQAADSRRSPSSRNNPDLPDASVLEMSESQPVEPNNIPDGGTLPGGKVGMRGATERSIND 560
WD40-rpts ____________)
Query 561 FRYKRYGRSNSRSRMGSPPRNHDENYDLVSHRSNRDPSPTESQKGGRFQSLVINRERRGRFSNFEGPVSNFSSGNMPAPN 640
WD40-rpts
Query 641 IRPSNMFKQRGNHMPVEQGIDSPSEENIVEDIMGKHNQFVSSMQSRLAKLQVVRRYWERNDVKNSIGSIEKMADNAVTAD 720
WD40-rpts
Query 721 VLGIITERNEILTLDNCTSLLPLLTALLGSGMDQHLSVSLDLLLKLVRLYGSPIYSSLSAPASVGVDIEAEQRIERYSRC 800
WD40-rpts
Query 801 FVELEKVKACLPSLARRGGLVAKSVLELNLAFQEVSS 837
WD40-rpts
 10 WD40-repeats found in QUERY=AT5G23430.1 (Len=837): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 1 5-45 7.38 419.69 0.00014 22.5% 53.11 WD 2: Seg 5 49-87 9.71 515.58 7.0e-06 37.5% 54.64 WD 3: Seg 9 91-129 10.34 541.62 3.1e-06 45.0% 53.35 WD 4: Seg 13 133-171 10.86 563.37 1.6e-06 50.0% 55.12 WD 5: Seg 17 175-213 9.66 513.51 7.5e-06 35.0% 55.36 WD 6: Seg 21 217-254 7.15 410.02 0.00019 30.0% 55.63 WD 7: Seg 25 258-295 5.50 341.71 0.00154 17.5% 53.04 WD 8: Seg 33 374-412 6.36 377.47 0.00051 17.5% 41.60 WD 9: Seg 37 413-451 6.70 391.44 0.00033 12.5% 40.35 WD10: Seg 40 455-493 4.01 280.36 0.01033 7.5% 18.13Multiple sequence alignment of 10 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 5-45 RAYKLQEFVAHSAAVNCLKIGRKSSRVLVTGGEDHKVNLWA WD 2 49-87 -PNAILSLYGHSSGIDSVTFD-ASEVLVAAGAASGTIKLWD WD 3 91-129 -AKIVRTLTGHRSNCISVDFH-PFGEFFASGSLDTNLKIWD WD 4 133-171 -KGCIHTYKGHTRGVNVLRFT-PDGRWVVSGGEDNIVKVWD WD 5 175-213 -GKLLTEFKSHEGQIQSLDFH-PHEFLLATGSADRTVKFWD WD 6 217-254 -FELIGSGGPETAGVRCLSFN-PDGKTVLCGLQE-SLKIFS WD 7 258-295 -IRCHDGVDVGWSRLSDMNVH--EGKLLGCSYNQSCVGVWV WD 8 374-412 -KSIGRSSTSQNSESSMKESK-PLGRLSVSQNSDVSKESRT WD 9 413-451 -FSSTGSLPGTPHRVSSTNVS-KATSGVSTAVSNAATSRRN WD10 455-493 -ANPKANPVNKAADFAPVIVP-RADPRIEQATESRAELDII WD40 Template TGECLRTLSGHTSGVTSVSFS-PDGKRLVSGSEDGTIKVWD |
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