Input parameters:

  Query = AT5G24320.1 (Len=694)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G24320.1, Len=694):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESLIEEEEESRFFDAHEEIASCSSPCKIESPSSISGEFRYDVWIKSPGNTEERREKFLKWMGLSSTVNESKSGNVYRLS 80  
WD40-rpts                (_______________WD 1______________)                            (______

Query       81 SSVNESAVLMSLKSDDDEFSSSRCDSFSPSESVDRVVNESLCKEEGEVDSGMVLRNLGFVDDGDISSSLCSLSSSPVSDK 160 
WD40-rpts      ___________WD 2________________)          (_____________WD 3____________)       

Query      161 IVKEHGEPKLLPDPMVAEEEREVSGIMKRVKEKWLSRLYKVRNKRSAGGDDNGGEVAVCGSRIERVKVKEYKKEAKELSA 240 
WD40-rpts          (______________________________WD 4______________________________)      (___

Query      241 LFKGQEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERCEEHDVPKIDPSCIYFEVSKLSELRPVAVEKDGIT 320 
WD40-rpts      ________________WD 5__________________)                (_________________WD 6___

Query      321 GSLMSPRKTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFSHNNYVT 400 
WD40-rpts      _____________)           (________________WD 7________________)(________________

Query      401 SVQFNPVDDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNVSGHCLQLDGHICL 480 
WD40-rpts      __WD 8__________________)(__________________WD 9_________________)              

Query      481 HNKKKSSNKRIIGFQFDSTDPSRVMVASADSQVRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVYVWNC 560 
WD40-rpts       (_______________WD10_______________)   (_________________WD11________________) 

Query      561 VGHDPEQSSPGFFSHTKRLKIRSFEKFSADVSVAIPWCGFTPVLSGGSELSPSLFSLGREYVLDSPKGSATWPEEKLASS 640 
WD40-rpts              (_____________________WD12_____________________)       (________________

Query      641 FSPVKAIRRSHYKFLRSSCRRTSESSHLWGLVIVTGGWDGRIKLFHNYGLPVPV 694 
WD40-rpts      _____________WD13____________________________)        

13 WD40-repeats found in QUERY=AT5G24320.1 (Len=694):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-45       3.13  243.77  0.03182       15.0%     -4.34
  WD 2:  Seg  2    74-112      3.91  276.18  0.01175       17.5%     12.68
  WD 3:  Seg  5   123-153      3.18  246.09  0.02964        7.5%      3.92
  WD 4:  Seg  6   165-230      5.87  357.12  0.00096       20.0%     48.61
  WD 5:  Seg 10   237-279      9.68  514.59  7.2e-06       35.0%     50.16
  WD 6:  Seg 15   296-334      5.41  337.95  0.00174       17.5%     46.07
  WD 7:  Seg 20   346-383      8.07  448.01  5.7e-05       27.5%     51.41
  WD 8:  Seg 24   384-425      8.15  451.15  5.2e-05       40.0%     55.44
  WD 9:  Seg 28   426-466      8.07  448.15  5.7e-05       20.0%     56.62
  WD10:  Seg 33   482-517      5.77  352.98  0.00109       15.0%     48.53
  WD11:  Seg 36   521-559      8.97  485.38  1.8e-05       30.0%     58.74
  WD12:  Seg 41   569-616      4.47  299.23  0.00576       15.0%     36.94
  WD13:  Seg 46   624-686      4.29  291.95  0.00722       25.0%     28.00

Multiple sequence alignment of 13 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-45     S------------------------RFF-----------------------DAHEEIASCSS-P------------C-KIESPSSISGEFRYDVWI
   WD 2   74-112    -G-N--------------V-Y---RLSS-----------------------SVNESAVLMSL-K------------S-DDDEFSSSRCDSFSPSES
   WD 3  123-153    ---------------------------------------------------KEEGEVDSGMV-L------------R-NLGFVDDGDISSSLCSLS
   WD 4  165-230    HG-EPKLLPDPMVAEEERE-V---SGIM-----------KRVKEKWLSRLYKVRNKRSAGGD-D------------N-GGEVAVCGSRIERVKVKE
   WD 5  237-279    EL-S--------------A-LFKGQEIQ-----------------------AHEGAILAMKF-S------------P-DGRYLASAGEDGVLRVWS
   WD 6  296-334    -P-S--------------C-I---YFEV-----------------------SKLSELRPVAV-E------------K-DGITGSLMSPRKTTESAC
   WD 7  346-383    -D-K--------------P-L---HEFL-----------------------GHSGDILDISW-S------------K-NN-RLLSASVDNSVRLWQ
   WD 8  384-425    IGCE--------------D-C---LGIF-----------------------SHNNYVTSVQF-N------------PVDDDHFISGSIDGKVRIWS
   WD 9  426-466    AS-Q--------------CQV---VDWA-----------------------DARGIVTAVCY-Q------------P-DGQAVIIGTLTSDCRFYN
   WD10  482-517    ------------------------NKKK-----------------------SSNKRIIGFQFDS------------T-DPSRVMVASADSQVRIIS
   WD11  521-559    -V-V--------------H-K---YKGS-----------------------RNAGNQISASF-T------------A-DGKHIVSACDDSSVYVWN
   WD12  569-616    --------------------S---PGFF-----------------------SHTKRLKIRSF-EKFSADVSVAIPWC-GFTPVLSGGSELSPSLFS
   WD13  624-686    DS-P--------------K-G---SATWPEEKLASSFSPVKAIRRSHYKFLRSSCRRTSESS-H------------L-WGLVIVTGGWDGRIKLFH

   WD40 Template    TG-E--------------C-L---RTLS-----------------------GHTSGVTSVSF-S------------P-DGKRLVSGSEDGTIKVWD