Input parameters:

  Query = AT5G24320.2 (Len=698)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G24320.2, Len=698):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MESLIEEEEESRFFDAHEEIASCSSPCKIESPSSISGEFRYDVWIKSPGNTEERREKFLKWMGLSSTVNESKSGNVYRLS 80  
WD40-rpts                (_______________WD 1______________)                            (______

Query       81 SSVNESAVLMSLKSDDDEFSSSRCDSFSPSESVDRVVNESLCKEEGEVDSGMVLRNLGFVDDGDISSSLCSLSSSPVSDK 160 
WD40-rpts      ___________WD 2________________)                                                

Query      161 IVKEHGEPKLLPDPMVAEEEREVSGIMKRVKEKWLSRLYKVRNKRSAGGDDNGGEVAVCGSRIERVKVKEYKKEAKELSA 240 
WD40-rpts                                            (_____________WD 3_____________)          

Query      241 LFKGQEIQAHEGAILAMKFSPDGRYLASAGEDGVLRVWSVVEDERCEEHDVPKIDPSCIYFEVSKLSELRPVAVEKDGIT 320 
WD40-rpts           (______________WD 4______________)                (_________________WD 5___

Query      321 GSLMSPRKTTESACVIIPPKIFRVLDKPLHEFLGHSGDILDISWSKNNRLLSASVDNSVRLWQIGCEDCLGIFSHNNYVT 400 
WD40-rpts      _____________)           (________________WD 6________________)(________________

Query      401 SVQFNPVDDDHFISGSIDGKVRIWSASQCQVVDWADARGIVTAVCYQPDGQAVIIGTLTSDCRFYNVSGHCLQLDGHICL 480 
WD40-rpts      __WD 7__________________)(__________________WD 8_________________)              

Query      481 HNKKKSSNKRIIGFQFLLQFDSTDPSRVMVASADSQVRIISGRNVVHKYKGSRNAGNQISASFTADGKHIVSACDDSSVY 560 
WD40-rpts       (_________________WD 9_________________)   (_________________WD10______________

Query      561 VWNCVGHDPEQSSPGFFSHTKRLKIRSFEKFSADVSVAIPWCGFTPVLSGGSELSPSLFSLGREYVLDSPKGSATWPEEK 640 
WD40-rpts      __)      (_______________________WD11______________________)                    

Query      641 LASSFSPVKAIRRSHYKFLRSSCRRTSESSHLWGLVIVTGGWDGRIKLFHNYGLPVPV 698 
WD40-rpts         (_____________________WD12____________________)        

12 WD40-repeats found in QUERY=AT5G24320.2 (Len=698):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-45       4.81  313.39  0.00372       15.0%     -2.05
  WD 2:  Seg  3    74-112      3.75  269.63  0.01438       17.5%      9.87
  WD 3:  Seg  5   199-230      5.42  338.55  0.00170       15.0%     40.79
  WD 4:  Seg  8   246-279      8.99  485.86  1.8e-05       32.5%     48.71
  WD 5:  Seg 12   296-334      5.75  352.31  0.00111       17.5%     42.94
  WD 6:  Seg 16   346-383      8.08  448.49  5.6e-05       27.5%     50.29
  WD 7:  Seg 20   384-425      8.14  450.77  5.2e-05       40.0%     53.57
  WD 8:  Seg 24   426-466      8.02  445.91  6.1e-05       20.0%     57.48
  WD 9:  Seg 29   482-521      5.95  360.29  0.00087       12.5%     23.03
  WD10:  Seg 32   525-563      8.80  478.26  2.2e-05       30.0%     58.22
  WD11:  Seg 36   570-620      3.94  277.49  0.01129       15.0%     31.65
  WD12:  Seg 42   644-690      6.61  387.82  0.00037       25.0%     37.29

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-45     -------SRFF-------DAHEEIASCSSP------------C-KIESPSSISGEFRYDVWI
   WD 2   74-112    -G-NV-YRLSS-------SVNESAVLMSLK------------S-DDDEFSSSRCDSFSPSES
   WD 3  199-230    ----------Y-------KVRNKRSAGGDD------------N-GGEVAVCGSRIERVKVKE
   WD 4  246-279    --------EIQ-------AHEGAILAMKFS------------P-DGRYLASAGEDGVLRVWS
   WD 5  296-334    -P-SC-IYFEV-------SKLSELRPVAVE------------K-DGITGSLMSPRKTTESAC
   WD 6  346-383    -D-KP-LHEFL-------GHSGDILDISWS------------K-NN-RLLSASVDNSVRLWQ
   WD 7  384-425    IGCED-CLGIF-------SHNNYVTSVQFN------------PVDDDHFISGSIDGKVRIWS
   WD 8  426-466    AS-QCQVVDWA-------DARGIVTAVCYQ------------P-DGQAVIIGTLTSDCRFYN
   WD 9  482-521    NK-KK-SSNKR-------IIGFQFLLQFDS------------T-DPSRVMVASADSQVRIIS
   WD10  525-563    -V-VH-KYKGS-------RNAGNQISASFT------------A-DGKHIVSACDDSSVYVWN
   WD11  570-620    -E-QS-SPGFF-------SHTKRLKIRSFEKFSADVSVAIPWC-GFTPVLSGGSELSPSLFS
   WD12  644-690    SF-SP-VKAIRRSHYKFLRSSCRRTSESSH------------L-WGLVIVTGGWDGRIKLFH

   WD40 Template    TG-EC-LRTLS-------GHTSGVTSVSFS------------P-DGKRLVSGSEDGTIKVWD