Input parameters:

  Query = AT5G24520.1 (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G24520.1, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDNSAPDSLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPT 80  
WD40-rpts                                                                (_____________________

Query       81 KLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIW 160 
WD40-rpts      __WD 1______________________)              (________________WD 2________________

Query      161 DIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILM 240 
WD40-rpts      )   (________________WD 3________________)      (__________________WD 4_________

Query      241 DSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWELPTVAGPNGIDPMSVYSAGSEINQLQW 320 
WD40-rpts      ________)    (_________________WD 5_________________)        (_________________W

Query      321 SSSQPDWIGIAFANKMQLLRV 341 
WD40-rpts      D 6________________) 

6 WD40-repeats found in QUERY=AT5G24520.1 (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    59-109      4.06  282.52  0.00966       22.5%     17.82
  WD 2:  Seg  9   124-161      6.05  364.44  0.00076       27.5%     45.29
  WD 3:  Seg 12   165-202      6.49  382.60  0.00043       20.0%     55.66
  WD 4:  Seg 16   209-249      4.01  280.31  0.01035        7.5%     52.64
  WD 5:  Seg 20   254-293      7.27  415.17  0.00016       22.5%     46.75
  WD 6:  Seg 24   302-340      4.41  296.86  0.00620        7.5%     42.45

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   59-109    DSDSMTVKPLPNLSFEHPYPPTKLMFSP-PS-LRRPSSGDLLASSGDF-LRLWE
   WD 2  124-161    NNS---------KTSEFCAPLTSFDWNDVEP-KRLGTC-----SIDTT-CTIWD
   WD 3  165-202    -SVVE------TQLIAHDKEVHDIAWG--EA-RVFASV-----SADGS-VRIFD
   WD 4  209-249    -STII------YESPQPDTPLLRLAWNKQDL-RYMATI-----LMDSNKVVILD
   WD 5  254-293    -TMPV------AELERHQASVNAIAWAP-QSCKHICSG-----GDDTQ-ALIWE
   WD 6  302-340    -GIDP------MSVYSAGSEINQLQWSS-SQ-PDWIGI-----AFANK-MQLLR

   WD40 Template    TGECL------RTLSGHTSGVTSVSFSP-DG-KRLVSG-----SEDGT-IKVWD