Input parameters:

  Query = AT5G24520.2 (Len=341)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G24520.2, Len=341):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDNSAPDSLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPT 80  
WD40-rpts                                                               (______________________

Query       81 KLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIW 160 
WD40-rpts      _WD 1_______________________)              (________________WD 2________________

Query      161 DIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILM 240 
WD40-rpts      )   (________________WD 3________________)      (__________________WD 4_________

Query      241 DSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWELPTVAGPNGIDPMSVYSAGSEINQLQW 320 
WD40-rpts      ________)    (_________________WD 5_________________)        (_________________W

Query      321 SSSQPDWIGIAFANKMQLLRV 341 
WD40-rpts      D 6________________) 

6 WD40-repeats found in QUERY=AT5G24520.2 (Len=341):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    58-109      5.80  354.29  0.00105       25.0%     16.77
  WD 2:  Seg  9   124-161      6.79  395.27  0.00029       27.5%     46.20
  WD 3:  Seg 12   165-202      7.22  413.01  0.00017       20.0%     56.13
  WD 4:  Seg 16   209-249      4.76  311.09  0.00399        7.5%     52.86
  WD 5:  Seg 20   254-293      7.81  437.11  8.0e-05       22.5%     47.62
  WD 6:  Seg 24   302-340      5.73  351.47  0.00114        7.5%     44.31

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   58-109    FDSDSMTVKPLPNLSFEHPYPPTKLMFSP-PS-LRRPSSGDLLASSG-DFLRLWE
   WD 2  124-161    NNS---KTS-------EFCAPLTSFDWNDVEP-KRLGTC-----SID-TTCTIWD
   WD 3  165-202    -SVVETQLI-------AHDKEVHDIAWG--EA-RVFASV-----SAD-GSVRIFD
   WD 4  209-249    -STIIYESP-------QPDTPLLRLAWNKQDL-RYMATI-----LMDSNKVVILD
   WD 5  254-293    -TMPVAELE-------RHQASVNAIAWAP-QSCKHICSG-----GDD-TQALIWE
   WD 6  302-340    -GIDPMSVY-------SAGSEINQLQWSS-SQ-PDWIGI-----AFA-NKMQLLR

   WD40 Template    TGECLRTLS-------GHTSGVTSVSFSP-DG-KRLVSG-----SED-GTIKVWD