Input parameters:
Query = AT5G24520.3 (Len=341)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT5G24520.3, Len=341):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MDNSAPDSLSRSETAVTYDSPYPLYAMAFSSLRSSSGHRIAVGSFLEDYNNRIDILSFDSDSMTVKPLPNLSFEHPYPPT 80
WD40-rpts (______________________
Query 81 KLMFSPPSLRRPSSGDLLASSGDFLRLWEINEDSSTVEPISVLNNSKTSEFCAPLTSFDWNDVEPKRLGTCSIDTTCTIW 160
WD40-rpts _WD 1_______________________) (________________WD 2________________
Query 161 DIEKSVVETQLIAHDKEVHDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILM 240
WD40-rpts ) (________________WD 3________________) (__________________WD 4_________
Query 241 DSNKVVILDIRSPTMPVAELERHQASVNAIAWAPQSCKHICSGGDDTQALIWELPTVAGPNGIDPMSVYSAGSEINQLQW 320
WD40-rpts ________) (_________________WD 5_________________) (_________________W
Query 321 SSSQPDWIGIAFANKMQLLRV 341
WD40-rpts D 6________________)
6 WD40-repeats found in QUERY=AT5G24520.3 (Len=341):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 58-109 5.80 354.29 0.00105 25.0% 16.77
WD 2: Seg 9 124-161 6.79 395.27 0.00029 27.5% 46.20
WD 3: Seg 12 165-202 7.22 413.01 0.00017 20.0% 56.13
WD 4: Seg 16 209-249 4.76 311.09 0.00399 7.5% 52.86
WD 5: Seg 20 254-293 7.81 437.11 8.0e-05 22.5% 47.62
WD 6: Seg 24 302-340 5.73 351.47 0.00114 7.5% 44.31
Multiple sequence alignment of 6 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 58-109 FDSDSMTVKPLPNLSFEHPYPPTKLMFSP-PS-LRRPSSGDLLASSG-DFLRLWE
WD 2 124-161 NNS---KTS-------EFCAPLTSFDWNDVEP-KRLGTC-----SID-TTCTIWD
WD 3 165-202 -SVVETQLI-------AHDKEVHDIAWG--EA-RVFASV-----SAD-GSVRIFD
WD 4 209-249 -STIIYESP-------QPDTPLLRLAWNKQDL-RYMATI-----LMDSNKVVILD
WD 5 254-293 -TMPVAELE-------RHQASVNAIAWAP-QSCKHICSG-----GDD-TQALIWE
WD 6 302-340 -GIDPMSVY-------SAGSEINQLQWSS-SQ-PDWIGI-----AFA-NKMQLLR
WD40 Template TGECLRTLS-------GHTSGVTSVSFSP-DG-KRLVSG-----SED-GTIKVWD