Input parameters:

  Query = AT5G27030.1 (Len=1108)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G27030.1, Len=1108):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLTLQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LMFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPHVPFPP 240 
WD40-rpts                                                                                      

Query      241 GPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTY 320 
WD40-rpts                                                               (______________WD 1____

Query      321 PAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQA 400 
WD40-rpts      _________)   (__________________WD 2_________________)               (__________

Query      401 LIAKETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIKV 480 
WD40-rpts      __________WD 3____________________)(_____________________WD 4___________________

Query      481 WDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTS 560 
WD40-rpts      _)  (__________________WD 5_________________)   (___________________WD 6________

Query      561 KDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNK 640 
WD40-rpts      __________)   (_________________WD 7_________________)(___________________WD 8__

Query      641 DGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFKAVPGAPVASVNCKVERGSPVRHSQMLNGVDPSKSRI 720 
WD40-rpts      _________________)(_________________WD 9_________________)                      

Query      721 DDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQ 800 
WD40-rpts                            (_________________WD10________________)                   

Query      801 HWQPNSGLLMTNDVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIG 880 
WD40-rpts                  (_______________WD11______________)   (_________________WD12________

Query      881 MEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMPAGKAANGDTRVQF 960 
WD40-rpts      _________)   (_________________WD13________________)            (_______________

Query      961 HVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYL 1040
WD40-rpts      WD14______________)(____________________WD15___________________)          (_____

Query     1041 PQGNQGLSPLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINSPSTTSNQTPEQLQR 1108
WD40-rpts      _____________WD16_________________)                                 

16 WD40-repeats found in QUERY=AT5G27030.1 (Len=1108):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   298-330      4.44  297.91  0.00600        5.0%     32.33
  WD 2:  Seg  6   334-374      5.53  343.28  0.00147       35.0%     53.93
  WD 3:  Seg 11   390-435      6.83  396.82  0.00028       20.0%     54.84
  WD 4:  Seg 15   436-482      6.89  399.08  0.00026       25.0%     53.48
  WD 5:  Seg 19   485-525      7.35  418.10  0.00014       30.0%     56.55
  WD 6:  Seg 23   529-571      6.14  368.35  0.00068       22.5%     54.27
  WD 7:  Seg 27   575-614      7.43  421.43  0.00013       30.0%     57.11
  WD 8:  Seg 31   615-658      6.74  392.95  0.00031       17.5%     55.57
  WD 9:  Seg 35   659-698      7.98  444.15  6.4e-05       12.5%     50.94
  WD10:  Seg 42   743-781      7.21  412.54  0.00017       15.0%     44.99
  WD11:  Seg 48   813-847      4.46  298.99  0.00581        7.5%     40.68
  WD12:  Seg 51   851-890      6.96  402.06  0.00024       25.0%     60.34
  WD13:  Seg 55   894-932      8.81  478.74  2.2e-05       32.5%     58.56
  WD14:  Seg 60   945-979      4.14  285.76  0.00874       20.0%     37.14
  WD15:  Seg 63   980-1024     6.60  387.42  0.00037       15.0%     49.80
  WD16:  Seg 68  1035-1075     6.37  377.91  0.00050       17.5%     44.60

Multiple sequence alignment of 16 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  298-330    -----------------------YQNPD-HELMK-R--LRPA-PSVEE--VTY----PAPRQQAPWS
   WD 2  334-374    -L-----P------T-----KAALALHQGSTVTS-M--EFYPMQNTLL--LVG----SATGEITLWE
   WD 3  390-435    DM-----SNCSHQFQ-----ALIAKETP-ISVTR-V--AWSP-DGNFI--GVA----FTKHLIQLYA
   WD 4  436-482    FSGPNDLR------Q-----HTEIDAHV-GAVND-L--AFAN-PNRQLCVITC----GDDKLIKVWD
   WD 5  485-525    -G-----R------K-----HFTFEGHD-APVYS-ICPHYKE-NIQFI--FST----AIDGKIKAWL
   WD 6  529-571    -L-----G------S-----RVDYDAPG-KWCTR-M--LYSA-DGTRL--FSCGTSKDGDSFLVEWN
   WD 7  575-614    -G-----S------I-----KRTYKEFQ-KKLAGVV--QFDT-SKNHF--LAV----GEDGQIKFWD
   WD 8  615-658    MN-----N--INVLT-----STDAEGGL-PALPH-L--RFNK-DGNLL--AVT----TADNGFKILA
   WD 9  659-698    NP-----A------G-----FRSLRAME-TPASE-T--MRTP-VDFKA--VPG----APVASVNCKV
   WD10  743-781    -Q-----A------T-----LPDTAGSS-TKVVQ-L--LYTN-SGAGI--LAL----GSNGIQRLWK
   WD11  813-847    --------------------DVSGVNLE-NAAPC-I--ALSK-NDSYV--MSA----A-GGKVSLFN
   WD12  851-890    -F-----K------V-----MTTFMPPP-PASTF-L--AFHPQDNNVI--AIG----MEDSTIHIYN
   WD13  894-932    -D-----E------V-----KSKLKGHQ-KRITG-L--AFST-ALNIL--VSS----GADAQICFWS
   WD14  945-979    --------------------QMPAGKAA-NGDTR-V--QFHV-DQLRI--LVV----H-ETQLAVFD
   WD15  980-1024   AS-----K------MECIRQWIPQDSLS-APISS-A--VYAC-NSQLI--YTT----FRDGNIGVFD
   WD16 1035-1075   SP-----S------A----YLPQGNQGL-SPLVV-A--AHPQ-DPNQF--AVG----LNDGSVKMME

   WD40 Template    TG-----E------C-----LRTLSGHT-SGVTS-V--SFSP-DGKRL--VSG----SEDGTIKVWD