Input parameters:

  Query = AT5G27030.2 (Len=1134)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G27030.2, Len=1134):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGFTKVDDNRYSMKIFFEIRKQK 80  
WD40-rpts                                                                                      

Query       81 YLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLTLQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDK 160 
WD40-rpts                                                                                      

Query      161 LMFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPHVPFPP 240 
WD40-rpts                                                                                      

Query      241 GPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTY 320 
WD40-rpts                                                               (______________WD 1____

Query      321 PAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQA 400 
WD40-rpts      _________)   (__________________WD 2_________________)               (__________

Query      401 LIAKETPISVTRVAWSPDGNFIGKLPVMHCWILIVCCLWSLVSVSYCAGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGA 480 
WD40-rpts      __________WD 3____________________)                          (__________________

Query      481 VNDLAFANPNRQLCVITCGDDKLIKVWDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVD 560 
WD40-rpts      ___WD 4____________________)  (__________________WD 5_________________)   (_____

Query      561 YDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWD 640 
WD40-rpts      ______________WD 6__________________)   (_________________WD 7_________________)

Query      641 MNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVDFKAVPGAPVASV 720 
WD40-rpts      (___________________WD 8___________________)(_________________WD 9______________

Query      721 NCKVERGSPVRHSQMLNGVDPSKSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAGILALGSN 800 
WD40-rpts      ___) (_______________WD10______________)        (_________________WD11__________

Query      801 GIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVM 880 
WD40-rpts      ______)                               (_______________WD12______________)   (___

Query      881 TTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSID 960 
WD40-rpts      ______________WD13_________________)   (_________________WD14________________)  

Query      961 TWEKRKSVAIQMPAGKAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYTT 1040
WD40-rpts                 (______________WD15______________)(____________________WD16__________

Query     1041 FRDGNIGVFDADSLRLRCRISPSAYLPQGNQGLSPLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAINS 1120
WD40-rpts      _________)          (__________________WD17_________________)                   

Query     1121 PSTTSNQTPEQLQR 1134
WD40-rpts                    

17 WD40-repeats found in QUERY=AT5G27030.2 (Len=1134):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   298-330      3.93  276.93  0.01149        5.0%     36.11
  WD 2:  Seg  8   334-374      5.65  348.23  0.00126       35.0%     52.08
  WD 3:  Seg 14   390-435      5.65  348.01  0.00127       17.5%     51.19
  WD 4:  Seg 20   462-508      6.84  397.27  0.00028       25.0%     52.26
  WD 5:  Seg 24   511-551      7.37  419.03  0.00014       30.0%     54.81
  WD 6:  Seg 28   555-597      5.86  356.87  0.00096       22.5%     55.13
  WD 7:  Seg 32   601-640      7.08  407.18  0.00020       30.0%     56.92
  WD 8:  Seg 36   641-684      6.67  390.13  0.00034       17.5%     52.93
  WD 9:  Seg 40   685-724      7.74  434.33  8.7e-05       12.5%     46.29
  WD10:  Seg 44   726-760      3.46  257.49  0.02090       12.5%     26.74
  WD11:  Seg 48   769-807      6.93  400.76  0.00025       15.0%     45.06
  WD12:  Seg 54   839-873      4.06  282.45  0.00968        7.5%     39.87
  WD13:  Seg 57   877-916      6.80  395.69  0.00029       25.0%     58.79
  WD14:  Seg 61   920-958      8.74  475.56  2.4e-05       32.5%     57.92
  WD15:  Seg 66   972-1005     3.75  269.60  0.01440       20.0%     42.81
  WD16:  Seg 69  1006-1050     6.44  380.76  0.00046       15.0%     51.00
  WD17:  Seg 74  1061-1101     6.07  365.22  0.00074       17.5%     43.60

Multiple sequence alignment of 17 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  298-330    -----------------------YQNPD-HELMKR-L--RPA-PSVEE--VTYPA----PRQQAPWS
   WD 2  334-374    -L-----P------T-----KAALALHQGSTVTSM-E--FYPMQNTLL--LVGSA----TGEITLWE
   WD 3  390-435    DM-----SNCSHQFQ-----ALIAKETP-ISVTRV-A--WSP-DGNFI--GKLPV----MHCWILIV
   WD 4  462-508    FSGPNDLR------Q-----HTEIDAHV-GAVNDL-A--FAN-PNRQLCVITCGD----DKLIKVWD
   WD 5  511-551    -G-----R------K-----HFTFEGHD-APVYSI-CPHYKE-NIQFI--FSTAI----DGKIKAWL
   WD 6  555-597    -L-----G------S-----RVDYDAPG-KWCTRM-L--YSA-DGTRL--FSCGTSKDGDSFLVEWN
   WD 7  601-640    -G-----S------I-----KRTYKEFQ-KKLAGVVQ--FDT-SKNHF--LAVGE----DGQIKFWD
   WD 8  641-684    MN-----N--INVLT-----STDAEGGL-PALPHL-R--FNK-DGNLL--AVTTA----DNGFKILA
   WD 9  685-724    NP-----A------G-----FRSLRAME-TPASET-M--RTP-VDFKA--VPGAP----VASVNCKV
   WD10  726-760    RG--------------------SPVRHS-QMLNGV-D--PSK--SRID--DSTDK----PKSWQLAE
   WD11  769-807    -Q-----A------T-----LPDTAGSS-TKVVQL-L--YTN-SGAGI--LALGS----NGIQRLWK
   WD12  839-873    --------------------DVSGVNLE-NAAPCI-A--LSK-NDSYV--MSAA-----GGKVSLFN
   WD13  877-916    -F-----K------V-----MTTFMPPP-PASTFL-A--FHPQDNNVI--AIGME----DSTIHIYN
   WD14  920-958    -D-----E------V-----KSKLKGHQ-KRITGL-A--FST-ALNIL--VSSGA----DAQICFWS
   WD15  972-1005   MP---------------------AGKAA-NGDTRV-Q--FHV-DQLRI--LVVH-----ETQLAVFD
   WD16 1006-1050   AS-----K------MECIRQWIPQDSLS-APISSA-V--YAC-NSQLI--YTTFR----DGNIGVFD
   WD17 1061-1101   SP-----S------A----YLPQGNQGL-SPLVVA-A--HPQ-DPNQF--AVGLN----DGSVKMME

   WD40 Template    TG-----E------C-----LRTLSGHT-SGVTSV-S--FSP-DGKRL--VSGSE----DGTIKVWD