Input parameters:

  Query = AT5G28350.1 (Len=1127)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G28350.1, Len=1127):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MYMAYGWPQVIPLLPGSCPSSQRVVYLKLAGRLLLVVSPSHLELWGSSQQRVRLGKYMRDDKSVREEGENLQAVWSPDAK 80  
WD40-rpts               (________________WD 1_______________)             (_______________WD 2_

Query       81 LIAVLTSSFFLHIYKIKFTDKRVKPGERQPSELCFATISLLLSEQVPFAGKDLSVSNFVRDSKTMLLGLSDGSLYSISWK 160 
WD40-rpts      ______________)                      (__________________WD 3_________________)  

Query      161 GEFGGAFSIGSHPSDSNDDRLLSYTLGNGLVSGVASPTLASDDKFSTNPAIVQLELCTRSKLLFVLNSDGQLVVCSVNKK 240 
WD40-rpts          (_________________WD 4________________)    (_________________WD 5___________

Query      241 GLKYTESIRAEKKVGGDAVCASVASEQQILAVGTRKGMVELYDLSHSISLLRTVSLHDWGYSADYTGPVNNIAWTPDNSA 320 
WD40-rpts      _____)________________WD 6________________)             (________________WD 7___

Query      321 FAVGWKSRGLAVWSVSGCRLMSTVRQIGLTSTSSPKINPKQDCKYEPLMSGTSAIQWDEYGYRLFATEEASYDRILAFSF 400 
WD40-rpts      _____________)               (_____________________WD 8_____________________)  (

Query      401 GKCCLNRGVSGKTYVRQVMYGDDRLLMVQAEDTDELKLLHLKLPVSYISQNWPVQHVAASEDGKYLAFAGLHGLILYDIR 480 
WD40-rpts      __________________WD 9_________________)(________________WD10________________)  

Query      481 FKKWRVFGDVSQEQQIHCKGLLWLGKIVVICNYIEASETYELLFYPRYHLDQSSLLCRKVLLGKPMVMDVYQDYILVSYL 560 
WD40-rpts                                                                                      

Query      561 PFFIHVYHVKIYGELTPSSKADLQLSTVRELSIMTAKSHPAAMGFVPDQHLREGELDNDNLSSDLSDREPSRCLILRGNG 640 
WD40-rpts                                                                                      

Query      641 ELSLLDLVDGRERELTDSVELFWVTCGQSEEKTNLVEEVSWLDYGHRGMQVWYPSLGDDPFMQEDFLQLDPELEFDREVY 720 
WD40-rpts                                                                                      

Query      721 PLGLLPNVGVVVGVSQRMSFSASAEFACFEPTPQAQTILHCLLRHLLQRDKNEEALLLAQLSAEKPHFSHCLEWLLFTVF 800 
WD40-rpts                                                                                      

Query      801 DAEISRPNPNRNQISGPGHLKKLSLLRKACDLIKKFPEYYDVVVNVARKTDARHWADLFSAAGISTTLFEDCFQRRWYRT 880 
WD40-rpts                                                                                      

Query      881 AACYILVIAKLEGVAVSQYCALRLLQATLDESLYDLAGELVRFLLRSGRDIEQAPTESDSLSPKLLGFLIFGSSHKKSSL 960 
WD40-rpts                                                                                      

Query      961 DKSSSFKEQSPHVASVKSILESHASYLMSGKELSKLVAFVKGTQFDIVDFLQRERYGCAQLQNFAAGLELIGQKLQMSEL 1040
WD40-rpts                                                                                      

Query     1041 QNRLDAEFLLAQMCSVKFKEWIVVLATLLQRSEVLYDIFRYDLRLWKAYSVTLESHLAFAHYHDLLQILEAKLSATSREE 1120
WD40-rpts                                                                                      

Query     1121 SNRGSIS 1127
WD40-rpts             

10 WD40-repeats found in QUERY=AT5G28350.1 (Len=1127):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    10-46       3.17  245.50  0.03019       17.5%     30.70
  WD 2:  Seg  5    60-95       3.86  274.13  0.01252       12.5%     44.16
  WD 3:  Seg 10   118-158      3.91  276.07  0.01179       17.5%     49.25
  WD 4:  Seg 14   165-203      2.87  233.39  0.04366       22.5%     32.00
  WD 5:  Seg 18   208-246      2.93  235.70  0.04070       15.0%     46.18
  WD 6:  Seg 21   245-283      5.18  328.53  0.00232       17.5%     49.88
  WD 7:  Seg 26   297-334      5.92  359.38  0.00089       17.5%     40.50
  WD 8:  Seg 30   350-397      3.15  244.77  0.03086       17.5%     38.41
  WD 9:  Seg 33   400-440      4.90  316.86  0.00334       20.0%     42.88
  WD10:  Seg 36   441-478      3.84  273.20  0.01288       22.5%     40.83

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   10-46     VIP-LL---PG--------SCPSSQRVVYLKLAGRLLLVVS-PSHLELWG
   WD 2   60-95     DDK-SV-R------------EEGENLQAVWSPDAKLIAVLTSSFFLHIYK
   WD 3  118-158    ISL-LLSEQVP--------FAGKDLSVSNFVRDSKTMLLGLSDGSLYSIS
   WD 4  165-203    -GA-FS-IGSH--------PSDSNDDRLLSYTLGNGLVSGVASPTLASDD
   WD 5  208-246    -NP-AI-VQLE--------LCTRSKLLFVLNSDGQLVVCSVNKKGLKYTE
   WD 6  245-283    -TE-SI-RAEK--------KVGGDAVCASVASEQQILAVGTRKGMVELYD
   WD 7  297-334    --H-DW-GYSA--------DYTGPVNNIAWTPDNSAFAVGWKSRGLAVWS
   WD 8  350-397    TST-SS-PKINPKQDCKYEPLMSGTSAIQWDEYGYRLFATEEASYDRILA
   WD 9  400-440    FGKCCL-NRGV--------SGKTYVRQVMYGDDRLLMVQAEDTDELKLLH
   WD10  441-478    -LK-LP-VSYI--------SQNWPVQHVAASEDGKYLAFAGLHG-LILYD

   WD40 Template    TGE-CL-RTLS--------GHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD