Input parameters:
Query = AT5G43930.1 (Len=726)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (AT5G43930.1, Len=726):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MTQSICSSSQDQSSSPRSLITPRKSATKFHRRRGRSVFNMLVQREMSPKAKFVPRKRWGKSRWYTDSSCGTNNESMKETG 80
WD40-rpts (_______________WD 1
Query 81 QSLTSWVEAESLQHLSAKYCPLGAPPRSTIAAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHH 160
WD40-rpts _______________)_________________WD 2________________) (_________________WD 3_
Query 161 SEIVASGSLDLEVRLWNTTTSECIRSHLFYRPIASIAFHAEGELLAVASGHKLHMWHYNRRGEGSSPTVVLKTRRSLRAV 240
WD40-rpts ________________) (________________WD 4_______________) (________________
Query 241 HFHPHGAPLLLTAEVNEIDSLDSSMSRATSMGYLRYPPPAILFTSTESNQTSLAAENENRTSSPPLPLATSSGPSGPNSV 320
WD40-rpts _WD 5________________) (_________________WD 6________________)(_____________
Query 321 PGNSPSNIFLTRAGDRTSPAVDGMDVDEAQPVGRNGIPSQVSNRSDFPELGQIRQLFHFRDRVSWELPFLQGWLMAQGHG 400
WD40-rpts __WD 7_______________)(___________________WD 8___________________)(_____________
Query 401 VANPVVTPTGSSNHGISAPSSTASLEAAVALLEIPSGVNLHAVSRRGGAQEQTSQPQFSRTGLPEGVSSRNTQHGSDAQP 480
WD40-rpts _______WD 9____________________)(_________________WD10________________)
Query 481 VVNRVQSELATSIAASAAAAAAAELPCTVKLRMWSHDIKDPYAQLKSDRCLFTIPHAVLCSEMGAHYSPCGRYLAACVAC 560
WD40-rpts (__________________WD11____________
Query 561 VFPHGEIDPGLQTQAQQDSGLATSPTRHPVTAHQVIYELRVYSLQKESFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAY 640
WD40-rpts ______)_______________WD12________________)(____________________WD13____________
Query 641 GRRHGSLLRSIVSDGETTSHFFTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTKEGKLRIFQYNTAATSN 720
WD40-rpts ________) (_________________WD14_________________)
Query 721 FTGPNT 726
WD40-rpts
14 WD40-repeats found in QUERY=AT5G43930.1 (Len=726):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 61-96 6.52 384.09 0.00041 17.5% 48.24
WD 2: Seg 8 96-134 8.30 457.55 4.2e-05 27.5% 48.84
WD 3: Seg 12 138-177 8.37 460.33 3.9e-05 35.0% 54.52
WD 4: Seg 16 181-217 6.10 366.75 0.00071 22.5% 54.24
WD 5: Seg 20 224-262 8.09 448.72 5.6e-05 22.5% 52.63
WD 6: Seg 24 268-306 4.98 320.57 0.00298 12.5% 35.32
WD 7: Seg 27 307-342 6.41 379.53 0.00048 20.0% 43.07
WD 8: Seg 30 343-386 5.14 326.84 0.00245 15.0% 47.17
WD 9: Seg 34 387-432 3.20 246.72 0.02908 15.0% 2.77
WD10: Seg 36 433-471 5.26 332.12 0.00208 2.5% 6.56
WD11: Seg 42 526-567 4.37 295.17 0.00653 12.5% 26.45
WD12: Seg 45 565-603 6.26 373.14 0.00058 15.0% 18.77
WD13: Seg 49 604-649 4.27 290.89 0.00746 12.5% 36.07
WD14: Seg 54 673-712 7.72 433.54 8.9e-05 27.5% 49.84
Multiple sequence alignment of 14 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 61-96 S-----------RWYTDSS--CGTNNESMKET-G-QSLTSWVE---AESLQ------HLS
WD 2 96-134 -SA------K-YCPLGAPP--RSTIAAAFSTD-G-RTLASTHG---DHTVK------IID
WD 3 138-177 -GN------C-LKVLTGHR--RTPWVVRFHPH-HSEIVASGSL---DLEVR------LWN
WD 4 181-217 -SE------C-IRSHLFYR--P-IASIAFHAE-G-ELLAVAS----GHKLH------MWH
WD 5 224-262 -GS------S-PTVVLKTR--RSLRAVHFHPH-G-APLLLTAE---VNEID------SLD
WD 6 268-306 -AT------S-MGYLRYPP--PAILFTSTESN-Q-TSLAAENE---NRTSS------PPL
WD 7 307-342 -----------PLATSSGP--SGPNSVPGNSP-S-NIFLTRAG---DRTSP------AVD
WD 8 343-386 GMD------VDEAQPVGRN--GIPSQVSNRSD-F-PELGQIRQLFHFRDRV------SWE
WD 9 387-432 LPF------L-QGWLMAQG--HGVANPVVTPT-G-SSNHGISA---PSSTASLEAAVALL
WD10 433-471 -EI------P-SGVNLHAV--SRRGGAQEQTS-Q-PQFSRTGL---PEGVS------SRN
WD11 526-567 KSD------R-CLFTIPHAVLCSEMGAHYSPC-G-RYLAACVA---CVFPH------GEI
WD12 565-603 -GE------I-DPGLQTQA--QQDSGLATSPT-R-HPVTAHQV---IYELR------VYS
WD13 604-649 LQKESFGSVL-VSRAIRAA--HCLTSIQFSPT-S-EHILLAYG---RRHGS------LLR
WD14 673-712 -ME------L-VRVLPSSE--DEVNVACFHPSPG-GGLVYGTK---EGKLR------IFQ
WD40 Template TGE------C-LRTLSGHT--SGVTSVSFSPD-G-KRLVSGSE---DGTIK------VWD