Input parameters:

  Query = AT5G43930.2 (Len=726)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G43930.2, Len=726):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQSICSSSQDQSSSPRSLITPRKSATKFHRRRGRSVFNMLVQREMSPKAKFVPRKRWGKSRWYTDSSCGTNNESMKETG 80  
WD40-rpts                                                                  (_______________WD 1

Query       81 QSLTSWVEAESLQHLSAKYCPLGAPPRSTIAAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVRFHPHH 160 
WD40-rpts      _______________)_________________WD 2________________)   (_________________WD 3_

Query      161 SEIVASGSLDLEVRLWNTTTSECIRSHLFYRPIASIAFHAEGELLAVASGHKLHMWHYNRRGEGSSPTVVLKTRRSLRAV 240 
WD40-rpts      ________________)   (________________WD 4_______________)      (________________

Query      241 HFHPHGAPLLLTAEVNEIDSLDSSMSRATSMGYLRYPPPAILFTSTESNQTSLAAENENRTSSPPLPLATSSGPSGPNSV 320 
WD40-rpts      _WD 5________________)     (_________________WD 6________________)(_____________

Query      321 PGNSPSNIFLTRAGDRTSPAVDGMDVDEAQPVGRNGIPSQVSNRSDFPELGQIRQLFHFRDRVSWELPFLQGWLMAQGHG 400 
WD40-rpts      __WD 7_______________)(___________________WD 8___________________)(_____________

Query      401 VANPVVTPTGSSNHGISAPSSTASLEAAVALLEIPSGVNLHAVSRRGGAQEQTSQPQFSRTGLPEGVSSRNTQHGSDAQP 480 
WD40-rpts      _______WD 9____________________)(_________________WD10________________)         

Query      481 VVNRVQSELATSIAASAAAAAAAELPCTVKLRMWSHDIKDPYAQLKSDRCLFTIPHAVLCSEMGAHYSPCGRYLAACVAC 560 
WD40-rpts                                                   (__________________WD11____________

Query      561 VFPHGEIDPGLQTQAQQDSGLATSPTRHPVTAHQVIYELRVYSLQKESFGSVLVSRAIRAAHCLTSIQFSPTSEHILLAY 640 
WD40-rpts      ______)_______________WD12________________)(____________________WD13____________

Query      641 GRRHGSLLRSIVSDGETTSHFFTVLEIYRVSDMELVRVLPSSEDEVNVACFHPSPGGGLVYGTKEGKLRIFQYNTAATSN 720 
WD40-rpts      ________)                       (_________________WD14_________________)        

Query      721 FTGPNT 726 
WD40-rpts            

14 WD40-repeats found in QUERY=AT5G43930.2 (Len=726):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    61-96       6.52  384.09  0.00041       17.5%     48.24
  WD 2:  Seg  8    96-134      8.30  457.55  4.2e-05       27.5%     48.84
  WD 3:  Seg 12   138-177      8.37  460.33  3.9e-05       35.0%     54.52
  WD 4:  Seg 16   181-217      6.10  366.75  0.00071       22.5%     54.24
  WD 5:  Seg 20   224-262      8.09  448.72  5.6e-05       22.5%     52.63
  WD 6:  Seg 24   268-306      4.98  320.57  0.00298       12.5%     35.32
  WD 7:  Seg 27   307-342      6.41  379.53  0.00048       20.0%     43.07
  WD 8:  Seg 30   343-386      5.14  326.84  0.00245       15.0%     47.17
  WD 9:  Seg 34   387-432      3.20  246.72  0.02908       15.0%      2.77
  WD10:  Seg 36   433-471      5.26  332.12  0.00208        2.5%      6.56
  WD11:  Seg 42   526-567      4.37  295.17  0.00653       12.5%     26.45
  WD12:  Seg 45   565-603      6.26  373.14  0.00058       15.0%     18.77
  WD13:  Seg 49   604-649      4.27  290.89  0.00746       12.5%     36.07
  WD14:  Seg 54   673-712      7.72  433.54  8.9e-05       27.5%     49.84

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   61-96     S-----------RWYTDSS--CGTNNESMKET-G-QSLTSWVE---AESLQ------HLS
   WD 2   96-134    -SA------K-YCPLGAPP--RSTIAAAFSTD-G-RTLASTHG---DHTVK------IID
   WD 3  138-177    -GN------C-LKVLTGHR--RTPWVVRFHPH-HSEIVASGSL---DLEVR------LWN
   WD 4  181-217    -SE------C-IRSHLFYR--P-IASIAFHAE-G-ELLAVAS----GHKLH------MWH
   WD 5  224-262    -GS------S-PTVVLKTR--RSLRAVHFHPH-G-APLLLTAE---VNEID------SLD
   WD 6  268-306    -AT------S-MGYLRYPP--PAILFTSTESN-Q-TSLAAENE---NRTSS------PPL
   WD 7  307-342    -----------PLATSSGP--SGPNSVPGNSP-S-NIFLTRAG---DRTSP------AVD
   WD 8  343-386    GMD------VDEAQPVGRN--GIPSQVSNRSD-F-PELGQIRQLFHFRDRV------SWE
   WD 9  387-432    LPF------L-QGWLMAQG--HGVANPVVTPT-G-SSNHGISA---PSSTASLEAAVALL
   WD10  433-471    -EI------P-SGVNLHAV--SRRGGAQEQTS-Q-PQFSRTGL---PEGVS------SRN
   WD11  526-567    KSD------R-CLFTIPHAVLCSEMGAHYSPC-G-RYLAACVA---CVFPH------GEI
   WD12  565-603    -GE------I-DPGLQTQA--QQDSGLATSPT-R-HPVTAHQV---IYELR------VYS
   WD13  604-649    LQKESFGSVL-VSRAIRAA--HCLTSIQFSPT-S-EHILLAYG---RRHGS------LLR
   WD14  673-712    -ME------L-VRVLPSSE--DEVNVACFHPSPG-GGLVYGTK---EGKLR------IFQ

   WD40 Template    TGE------C-LRTLSGHT--SGVTSVSFSPD-G-KRLVSGSE---DGTIK------VWD