Input parameters:

  Query = AT5G43930.4 (Len=752)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G43930.4, Len=752):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTQSICSSSQDQSSSPRSLITPRKSATKFHRRRGRSVFNMLVQREMSPKAKFVPRKRWGKSRWYTDSSCGTNNESMKETG 80  
WD40-rpts                                                                  (_______________WD 1

Query       81 QSLTSWVEAESLQHLSAKYCPLGAPPRSTIAAAFSTDGRTLASTHGDHTVKIIDCETGNCLKVLTGHRRTPWVVNNSISD 160 
WD40-rpts      _______________)_________________WD 2________________)                          

Query      161 SEMNFAHTFGICSVGWLVRFHPHHSEIVASGSLDLEVRLWNTTTSECIRSHLFYRPIASIAFHAEGELLAVASGHKLHMW 240 
WD40-rpts       (_________________WD 3_________________)   (________________WD 4_______________

Query      241 HYNRRGEGSSPTVVLKTRRSLRAVHFHPHGAPLLLTAEWQVNEIDSLDSSMSRATSMGYLRYPPPAILFTSTESNQTSLA 320 
WD40-rpts      )      (_________________WD 5________________)(_______________WD 6______________

Query      321 AENENRTSSPPLPLATSSGPSGPNSVPGNSPSNIFLTRAGDRTSPAVDGMDVDEAQPVGRNGIPSQVSNRSDFPELGQIR 400 
WD40-rpts      _)   (___________________WD 7__________________)(___________________WD 8________

Query      401 QLFHFRDRVSWELPFLQGWLMAQGHGVANPVVTPTGSSNHGISAPSSTASLEAAVALLEIPSGVNLHAVSRRGGAQEQTS 480 
WD40-rpts      ___________)(___________________WD 9___________________) (_________________WD10_

Query      481 QPQFSRTGLPEGVSSRNTQHGSDAQPVVNRVQSELATSIAASAAAAAAAELPCTVKLRMWSHDIKDPYAQLKSDRCLFTI 560 
WD40-rpts      ________________)                                                      (________

Query      561 PHAVLCSEMGAHYSPCGRYLAACVACVFPHGEIDPGLQTQAQQDSGLATSPTRHPVTAHQVIYELRVYSLQKESFGSVLV 640 
WD40-rpts      __________WD11__________________)_______________WD12________________)   (_______

Query      641 SRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLRSIVSDGETTSHFFTVLEIYRVSDMELVRVLPSSEDEVNVACFHPS 720 
WD40-rpts      ____________WD13__________________)                       (_________________WD14

Query      721 PGGGLVYGTKEGKLRIFQYNTAATSNFTGPNT 752 
WD40-rpts      _________________)              

14 WD40-repeats found in QUERY=AT5G43930.4 (Len=752):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5    61-96       6.57  385.97  0.00039       17.5%     44.66
  WD 2:  Seg  8    96-134      8.29  457.09  4.3e-05       27.5%     45.38
  WD 3:  Seg 13   162-201      6.27  373.81  0.00057       25.0%     48.75
  WD 4:  Seg 17   205-241      6.28  374.19  0.00056       22.5%     52.83
  WD 5:  Seg 21   248-286      7.71  433.22  9.0e-05       17.5%     48.58
  WD 6:  Seg 25   287-322      6.86  398.23  0.00027       10.0%     35.69
  WD 7:  Seg 28   326-368      6.14  368.30  0.00068       22.5%     32.96
  WD 8:  Seg 32   369-412      5.81  354.65  0.00103       15.0%     44.03
  WD 9:  Seg 36   413-456      4.52  301.35  0.00540       15.0%      9.29
  WD10:  Seg 39   458-497      4.76  311.44  0.00395        2.5%     -2.08
  WD11:  Seg 44   552-593      4.19  287.58  0.00826       10.0%     23.57
  WD12:  Seg 47   591-629      5.83  355.35  0.00101       15.0%      9.48
  WD13:  Seg 50   633-675      4.79  312.44  0.00383       15.0%     37.87
  WD14:  Seg 55   699-738      7.77  435.65  8.4e-05       27.5%     49.65

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   61-96     S------RW----YT----DSS----CGTNNESMKE-T-GQSLTSWVEAESLQ----HLS
   WD 2   96-134    -SA--KYCP----LG----APP----RSTIAAAFST-D-GRTLASTHGDHTVK----IID
   WD 3  162-201    -EM--NFAH----TF----GIC----SVGWLVRFHPHH-SEIVASGSLDLEVR----LWN
   WD 4  205-241    -SE--CIRS----HL----FYR----P-IASIAFHA-E-GELLAVASGH-KLH----MWH
   WD 5  248-286    -GS--SPTV----VL----KTR----RSLRAVHFHP-H-GAPLLLTAEWQVNE----IDS
   WD 6  287-322    ------LDS----SM----SRA----TSMGYLRYPP-P-AILFTSTESNQTSL----AAE
   WD 7  326-368    -RT--SSPP----LP----LATSSGPSGPNSVPGNS-P-SNIFLTRAGDRTSP----AVD
   WD 8  369-412    GMD--VDEAQPVGRN----GIP----SQVSNRSDFP-E-LGQIRQLFHFRDRV----SWE
   WD 9  413-456    LPF--LQGW----LM----AQG----HGVANPVVTP-T-GSSNHGISAPSSTASLEAAVA
   WD10  458-497    LEI--PSGV----NL----HAV----SRRGGAQEQT-S-QPQFSRTGLPEGVS----SRN
   WD11  552-593    KSDRCLFTI----PH----AVL----CSEMGAHYSP-C-GRYLAACVACVFPH----GEI
   WD12  591-629    -GE--IDPG----LQ----TQA----QQDSGLATSP-T-RHPVTAHQVIYELR----VYS
   WD13  633-675    -ES--FGSV----LVSRAIRAA----HCLTSIQFSP-T-SEHILLAYGRRHGS----LLR
   WD14  699-738    -ME--LVRV----LP----SSE----DEVNVACFHP-SPGGGLVYGTKEGKLR----IFQ

   WD40 Template    TGE--CLRT----LS----GHT----SGVTSVSFSP-D-GKRLVSGSEDGTIK----VWD