Input parameters:

  Query = AT5G52820.1 (Len=473)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G52820.1, Len=473):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTMMDTDEGKTVMCLLTDPEGTHLGSAMYIPQKAGPLQLTQLVNRFLDNEEMLPYSFYVSDEELLVPVGTYLEKNKVSVE 80  
WD40-rpts      (_____________________WD 1_____________________)                                

Query       81 KVLTIVYQQQAVFRIRPVNRCSQTIAGHAEAVLCVSFSPDGKQLASGSGDTTVRLWDLYTETPLFTCKGHKNWVLTVAWS 160 
WD40-rpts                       (_________________WD 2_________________)   (_________________WD

Query      161 PDGKHLVSGSKSGEICCWNPKKGELEGSPLTGHKKWITGISWEPVHLSSPCRRFVTSSKDGDARIWDITLKKSIICLSGH 240 
WD40-rpts       3________________)     (___________________WD 4__________________)   (_________

Query      241 TLAVTCVKWGGDGIIYTGSQDCTIKMWETTQGKLIRELKGHGHWINSLALSTEYVLRTGAFDHTGRQYPPNEEKQKALER 320 
WD40-rpts      _______WD 5________________)   (________________WD 6________________)(__________

Query      321 YNKTKGDSPERLVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFVTVFRG 400 
WD40-rpts      _____WD 7_______________)    (_________________WD 8________________)   (________

Query      401 HVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDLPGHADEVFAVDWSPDGEKVVSGGKDRVLKLWKG 473 
WD40-rpts      _________WD 9________________)   (_________________WD10________________) 

10 WD40-repeats found in QUERY=AT5G52820.1 (Len=473):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-48       3.22  247.54  0.02835       17.5%     24.11
  WD 2:  Seg  8    98-137     12.62  635.89  1.7e-07       52.5%     53.91
  WD 3:  Seg 12   141-179     10.28  539.14  3.4e-06       47.5%     53.76
  WD 4:  Seg 16   185-227      7.84  438.37  7.7e-05       32.5%     48.31
  WD 5:  Seg 19   231-268      8.73  475.39  2.4e-05       42.5%     55.00
  WD 6:  Seg 23   272-309      7.53  425.65  0.00011       27.5%     50.89
  WD 7:  Seg 27   310-345      6.07  365.47  0.00074       22.5%     30.73
  WD 8:  Seg 30   350-388      9.59  510.91  8.1e-06       37.5%     53.31
  WD 9:  Seg 34   392-430     10.32  540.77  3.2e-06       40.0%     57.62
  WD10:  Seg 38   434-472     10.07  530.60  4.4e-06       37.5%     51.03

Multiple sequence alignment of 10 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-48     ----MTMMDTDEGKTVMCLLTDP-----EGTHLGS-AMYIPQKAGPLQLTQLVNRFLD
   WD 2   98-137    VNRCSQTIAGHAE-AVLCVSFSP-----DGKQLASGSGDTTVRLW------------D
   WD 3  141-179    -ETPLFTCKGHKN-WVLTVAWSP-----DGKHLVSGSKSGEICCW------------N
   WD 4  185-227    --LEGSPLTGHKK-WITGISWEPVHLSSPCRRFVTSSKDGDARIW------------D
   WD 5  231-268    -KKSIICLSGHTL-AVTCVKWGG-----DG-IIYTGSQDCTIKMW------------E
   WD 6  272-309    -GKLIRELKGHGH-WINSLALST-----EY-VLRTGAFDHTGRQY------------P
   WD 7  310-345    ----PNEEKQKAL-ERYNKTKGD-----SPERLVSGSDDFTMFLW------------E
   WD 8  350-388    -KQPKKRLTGHQQ-LVNHVYFSP-----DGKWIASASFDKSVRLW------------N
   WD 9  392-430    -GQFVTVFRGHVG-PVYQVSWSA-----DSRLLLSGSKDSTLKIW------------E
   WD10  434-472    -KKLKQDLPGHAD-EVFAVDWSP-----DGEKVVSGGKDRVLKLW------------K

   WD40 Template    TGECLRTLSGHTS-GVTSVSFSP-----DGKRLVSGSEDGTIKVW------------D