Input parameters:

  Query = AT5G53500.1 (Len=654)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G53500.1, Len=654):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MDYLSQEEDLQFFDANEEMMALNPSGFGFDVWNDSPGSVVERRRKFLEWMGVEEEGRVETKDSVSGSSVESCFDGGEENS 80  
WD40-rpts                                                                      (_______________

Query       81 VEAEERSGECSSSSSEVSLSGSSVEVSEELSLRVDRNVGGCDVTRRQSSSMASCSSSRYCQVKETEKQRNIAGLVTSFKK 160 
WD40-rpts      __WD 1________________)  (_________________WD 2________________)              (_

Query      161 GWLSRLRSMGCTADTNIESGGRMRASSGYGDVISRVKVKHCKKQAKELSALYQSQDIKAHDGAILAMKFSNDGKFLASSG 240 
WD40-rpts      ________________WD 3________________)  (______________________WD 4______________

Query      241 EDGIVRVWKVVEDKKSRLRRDCLNEIDPSCMYFEVNDLSQLKPVLVNEEKPKKTTESFRKTSDSACVVFPPKVFRIMEKP 320 
WD40-rpts      ________)          (_______________________WD 5______________________)       (__

Query      321 LYEFRGHTGEVLDISWSKDNYLLSASMDKTVRLWKVGSNDCLGVFAHNSYVTSVQFNPVNENYFMSGSIDGKVRIWNISG 400 
WD40-rpts      ______________WD 6________________)(__________________WD 7__________________)  (

Query      401 CSVVDWADLKDIISAVCYRPDGQGGIIGSLNGSCRFFNMSGEFLELDSQIHLHNKKKSSNKRITGFQFLPQEPTKVLVVS 480 
WD40-rpts      _________________WD 8________________)              (________________WD 9_______

Query      481 ADSKVRILQGNNVVRKYKGVCKTRSLTSASLTSDGKHIVSACEDSNVYIWSNDEESETKKIRSFERFSANASVAATWCGF 560 
WD40-rpts      ________)   (_________________WD10________________)              (______________

Query      561 SDHNTTLPFSSPSCLSHNEGFVPGSISKGSATWPEENLPANPLSTSAMNASHYKFLKSSYQRASSSLSWGMVIVTGGWDG 640 
WD40-rpts      ________WD11_____________________)             (_________________WD12___________

Query      641 QIRTFQNYGLPVTT 654 
WD40-rpts      _____)        

12 WD40-repeats found in QUERY=AT5G53500.1 (Len=654):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    65-103      5.43  339.05  0.00168       10.0%     27.67
  WD 2:  Seg  6   106-144      4.67  307.46  0.00447       10.0%     43.21
  WD 3:  Seg 10   159-197      5.48  341.07  0.00158        7.5%     43.24
  WD 4:  Seg 13   200-249      9.37  501.89  1.1e-05       32.5%     46.98
  WD 5:  Seg 17   260-310      2.85  232.31  0.04511       12.5%     21.27
  WD 6:  Seg 20   318-355      8.18  452.76  4.9e-05       35.0%     52.72
  WD 7:  Seg 24   356-397      7.83  438.02  7.8e-05       37.5%     54.01
  WD 8:  Seg 28   400-438      8.40  461.79  3.7e-05       20.0%     55.52
  WD 9:  Seg 33   453-489      6.18  370.14  0.00064       12.5%     47.68
  WD10:  Seg 36   493-531      8.76  476.53  2.4e-05       30.0%     58.32
  WD11:  Seg 41   546-594      4.86  315.22  0.00351       20.0%      5.22
  WD12:  Seg 45   608-646      5.83  355.47  0.00101       20.0%     39.83

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   65-103    -S-------G----------SSVESCFDGGEENSVEAEE-RSGECS----SSSSEVSLSGSS
   WD 2  106-144    -V-------S----------EELSLRVDRNVGGCDVTRR-QSSSMA----SCSSSRYCQVKE
   WD 3  159-197    -K-------K----------GWLSRLRSMGCTADTNIES-GGRMRA----SSGYGDVISRVK
   WD 4  200-249    HC-------KKQAKELSALYQSQDIKAHDGAILAMKFSN-DGKFLA----SSGEDGIVRVWK
   WD 5  260-310    RDCLNEIDPS----------CMYFEVNDLSQLKPVLVNE-EKPKKTTESFRKTSDSACVVFP
   WD 6  318-355    -E-------K----------PLYEFRGHTGEVLDISWSK-DN-YLL----SASMDKTVRLWK
   WD 7  356-397    VG-------S---------NDCLGVFAHNSYVTSVQFNPVNENYFM----SGSIDGKVRIWN
   WD 8  400-438    -G-------C----------SVVDWADLKDIISAVCYRP-DGQGGI----IGSLNGSCRFFN
   WD 9  453-489    ---------------------HNKKKSSNKRITGFQFLPQEPTKVL----VVSADSKVRILQ
   WD10  493-531    -V-------V----------RKYKGVCKTRSLTSASLTS-DGKHIV----SACEDSNVYIWS
   WD11  546-594    RF-------S-ANASVAATWCGFSDHNTTLPFSSPSCLS-HNEGFV----PGSISKGSATWP
   WD12  608-646    -M-------N----------ASHYKFLKSSYQRASSSLS-WGMVIV----TGGWDGQIRTFQ

   WD40 Template    TG-------E----------CLRTLSGHTSGVTSVSFSP-DGKRLV----SGSEDGTIKVWD