Input parameters:

  Query = AT5G58230.1 (Len=424)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (AT5G58230.1, Len=424):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQKMILGTHTSESEPNYL 80  
WD40-rpts                                                                                      

Query       81 MLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPS 160 
WD40-rpts                                                (_____________WD 1_____________)      

Query      161 KPPLDGACNPDLKLRGHSSEGYGLSWSKFKQGHLLSGSDDAQICLWDINATPKNKSLDAQQIFKAHEGVVEDVAWHLRHE 240 
WD40-rpts             (_________________WD 2_________________)             (_______________WD 3

Query      241 YLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRKLSTALHTFDSHKEEV 320 
WD40-rpts      _______________)      (_________________WD 4_________________)    (_____________

Query      321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQ 400 
WD40-rpts      ____WD 5_________________)(__________________________WD 6_______________________

Query      401 IWQMAENIYHDEDDAPGEEPSKAS 424 
WD40-rpts      __)                     

6 WD40-repeats found in QUERY=AT5G58230.1 (Len=424):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  5   123-154      3.13  244.08  0.03152       12.5%     45.72
  WD 2:  Seg  8   168-207      5.82  355.08  0.00102       35.0%     51.94
  WD 3:  Seg 12   221-256      5.32  334.37  0.00194       20.0%     46.76
  WD 4:  Seg 15   263-302      6.51  383.51  0.00042       25.0%     50.83
  WD 5:  Seg 19   307-346      6.67  390.36  0.00034       27.5%     50.45
  WD 6:  Seg 23   347-403      5.35  335.71  0.00186       30.0%     54.78

Multiple sequence alignment of 6 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  123-154    -------------------------NHDGEVNRARYMP-QNPFI-I-ATKTVNAEVYVFD
   WD 2  168-207    -C----------------NPDLKLRGHSSEGYGLSWSK-FKQGH-L-LSGSDDAQICLWD
   WD 3  221-256    ---------------------QIFKAHEGVVEDVAWHL-RHE-Y-LFGSVGDDQYLLIWD
   WD 4  263-302    -S----------------KPVQSVVAHSMEVNCLAFNP-FNEWV-V-ATGSTDKTVKLFD
   WD 5  307-346    -S----------------TALHTFDSHKEEVFQVGWNP-KNE-TIL-ASCCLGRRLMVWD
   WD 6  347-403    LSRIDEEQTVEDAEDGPPELLFIHGGHTSKISDFSWNPCEDW-V-I-SSVAEDNILQIWQ

   WD40 Template    TG----------------ECLRTLSGHTSGVTSVSFSP-DGK-R-L-VSGSEDGTIKVWD