Input parameters:

  Query = B0228.4a (Len=1633)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (B0228.4a, Len=1633):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNDYEIRDLTGSSQKSNNQKISNNSGESAHFNGTSENVKTESDDDSTCSSSLNKLSNRHSEPMNHLSVGGFVAKDLLSSL 80  
WD40-rpts                                                                                      

Query       81 TIPLPQTVIRTCQSIDIDTPDRSRNDKTLTSFFYSSCKNLLLTTIIPDPLDLVAAAVGQSTAQALLVAQIGWMVCVCCRC 160 
WD40-rpts                                                                                      

Query      161 CLCKCIANGRGVRGQKKQIQEPTIADDDGRDLPYEVPGSIHIPKPVYNKKLSKSRSSSVPHVSVPSLVSSSADYKRLSMW 240 
WD40-rpts                                                                                      

Query      241 ETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTRKPGFRPLRGSGSPPPPDPSTSTKVAVTSASEVKKIKD 320 
WD40-rpts                                                                                      

Query      321 HKKQLKKEKEKKKKMDKKQSSSGGGFFTRWFGGSGSNNSQQNLAEDVIDARSERKTAKQREQELLQRSERRSGGRTHSHE 400 
WD40-rpts                                                                                      

Query      401 EYRRHQQPSLMVNTNFDEDDYATIDRVRRSNNREMSMPASPRNVHFVDETSGPLSRTMNESAFGDRAHLQYRPRAQKGAA 480 
WD40-rpts                                                                                      

Query      481 GPTTRGAPTSSVNQLDEATLDLLRLSTEPSPVPSRRALPKSASLSSVQQKQPIKTADGGQLKIGSVYTWDQNSVDTTTDD 560 
WD40-rpts                                                                                      

Query      561 ERAKDFLRGDRSSRLSPQSERKNERQIQIRQQSSGPTNRRETEIEYEEKRQGPPVVRTTVEGKLKMEKIVGADLITVDSC 640 
WD40-rpts                                                                                      

Query      641 ISSAWTVRDTVTNYKIKSTIGKKSLILEEIKDGQSKYKITLIENGETKMEREASLDVPDFVNKKDYLAEVSKKLLSDLRE 720 
WD40-rpts                 (_________________WD 1_________________)                             

Query      721 DSESVSALTHIEVEIVEDVTNILKTYVIGERADDVLAEEQLRLHYEQTADKTPSPIPLEKVEKIYVDELQKDKIELEDPE 800 
WD40-rpts                                                                                      

Query      801 KADIHLIKDGRHFEGEGALKRIRRFETEESIEKPTVIRMEPRCAHAFADCDVAKKDDTSNYTVKIAVPLVHTITFLLKKS 880 
WD40-rpts                                                                                      

Query      881 KMMRQQKAAGYEMEQEGQRFEDETTLRRIKRYETEEEEEKQHVAVIQHVEEVKVATMKTQREVEAEGGQYEMSQEGIHLR 960 
WD40-rpts                                                                                      

Query      961 GETTFKKRGKHLDSESSEERFMEREAEGGQYAMQMEGERLLGEKKFRSKGRHYESESEESMASWNGGSPTLVDLVKKESS 1040
WD40-rpts                                                                                      

Query     1041 SIFEATFETANNHSPIVAEVRRPKLKKENTTIGCTISNQKATSANAELTTKHVNTEKGSGKFRELGEEQAMMLCGFENQK 1120
WD40-rpts                                                                                      

Query     1121 SSKEEVTGSRQQKNEIKVAFAAGSAETENTTISTTIFHDADSFAVEGSSKSANSTATYGRFKEMSEENASNMVYLQKSES 1200
WD40-rpts                                                                                      

Query     1201 SSSNLSGAETKMKHIQRQSSEARFSEFKQVAESCAVMIKNTGVERGSTSSTVAEAATEVIEETIIRVDEQLEKKTTVIET 1280
WD40-rpts                                                                                      

Query     1281 EQASEVKMREKGEERRKEEKRVSFAAEVQEKTMEAIDKSLGLDTSMEVEPAFQKPSIIKKPMKKERERRSRDLRQNAAPA 1360
WD40-rpts                                                                                      

Query     1361 FKPVRRNSLLQALAIGSPHNIPHFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQ 1440
WD40-rpts                                                                                      

Query     1441 VIQIVGKTLSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLIDRAIE 1520
WD40-rpts                                                                                      

Query     1521 ICKEKHSYHILVIVADGQVTNEKINQKAIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVMFNAP 1600
WD40-rpts                                                                                      

Query     1601 NADASFALNALMEIPDQYKAIKELGLLKHSRRG 1633
WD40-rpts                                       

1 WD40-repeats found in QUERY=B0228.4a (Len=1633):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 12   652-691      3.45  257.36  0.02098       17.5%     31.67

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  652-691    TNYKIKSTIGKKSLILEEIKDGQSKYKITLIENGETKMER

   WD40 Template    TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD