WDRR: WD40 Repeat Recognition
| [HOME] [JOB LIST] [PRE-CALCULATED RESULTS] [VISITORS] [ABOUT] |
| Pre-calculated Results - Accession: B0228.4c [Caenorhabditis elegans] [Download result as txt] [Query sequence in FASTA]
Input parameters:
Query = B0228.4c (Len=7705) Tmplt = WD40-str (Len=40) Method = bdp Gap-open = 50 Gap-extend = 3 Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3Query sequence (B0228.4c, Len=7705): (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) 10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNDYEIRDLTGSSQKSNNQKISNNSGESAHFNGTSENVKTESDDDSTCSSSLNKLSNRHSEPMNHLSVGGFVAKDLLSSL 80
WD40-rpts
Query 81 TIPLPQTVIRTCQSIDIDTPDRSRNDKTLTSFFYSSCKNLLLTTIIPDPLDLVAAAVGQSTAQALLVAQIGWMVCVCCRC 160
WD40-rpts
Query 161 CLCKCIANGRGVRGQKKQIQEPTIADDDGRDLPYEVPGSIHIPKPVYNKKLSKSRSSSVPHVSVPSLVSSSADYKRLSMW 240
WD40-rpts
Query 241 ETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTRKPGFRPLRGSGSPPPPDPSTSTKVAVTSASEVKKIKD 320
WD40-rpts
Query 321 HKKQLKKEKEKKKKMDKKQSSSGGGFFTRWFGGSGSNNSQQNLAEDVIDARSERKTAKQREQELLQRSERRSGGRTHSHE 400
WD40-rpts
Query 401 EYRRHQQPSLMVNTNFDEDDYATIDRVRRSNNREMSMPASPRNVHFVDETSGPLSRTMNESAFGDRAHLQYRPRAQKGAA 480
WD40-rpts
Query 481 GPTTRGAPTSSVNQLDEATLDLLRLSTEPSPVPSRRALPKSASLSSVQQKQPIKTADGGQLKIGSVYTWDQNSVDTTTDD 560
WD40-rpts
Query 561 ERAKDFLRGDRSSRLSPQSERKNERQIQIRQQSSGPTNRRETEIEYEEKRQGPPVVRTTVEGKLKMEKIVGADLITVDSC 640
WD40-rpts
Query 641 ISSAWTVRDTVTNYKIKSTIGKKSLILEEIKDGQSKYKITLIENGETKMEREASLDVPDFVNKKDYLAEVSKKLLSDLRE 720
WD40-rpts
Query 721 DSESVSALTHIEVEIVEDVTNILKTYVIGERADDVLAEEQLRLHYEQTADKTPSPIPLEKVEKIYVDELQKDKIELEDPE 800
WD40-rpts
Query 801 KADIHLIKDGRHFEGEGALKRIRRFETEESIEKPTVIRMEPRCAHAFADCDVAKKDDTSNYTVKIAVPLVHTITFLLKKS 880
WD40-rpts
Query 881 KMMRQQKAAGYEMEQEGQRFEDETTLRRIKRYETEEEEEKQHVAVIQHVEEVKVATMKTQREVEAEGGQYEMSQEGIHLR 960
WD40-rpts
Query 961 GETTFKKRGKHLDSESSEERFMEREAEGGQYAMQMEGERLLGEKKFRSKGRHYESESEESMASWNGGSPTLVDLVKKESS 1040
WD40-rpts
Query 1041 SIFEATFETANNHSPIVAEVRRPKLKKENTTIGCTISNQKATSANAELTTKHVNTEKGSGKFRELGEEQAMMLCGFENQK 1120
WD40-rpts
Query 1121 SSKEEVTGSRQQKNEIKVAFAAGSAETENTTISTTIFHDADSFAVEGSSKSANSTATYGRFKEMSEENASNMVYLQKSES 1200
WD40-rpts
Query 1201 SSSNLSGAETKMKHIQRQSSEARFSEFKQVAESCAVMIKNTGVERGSTSSTVAEAATDLRIRRKDAKGEIIVFVLFKRVF 1280
WD40-rpts
Query 1281 GNYVHASMRLASSGSGLLRENRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSSFYHQESDEHGLEPDQQVSK 1360
WD40-rpts
Query 1361 QLSSIERQLLKLDEVVIGNECTDVVEVKVTIKKREQNANQLIVVLEELLETAICGGIREIKRSIVDTSLESRVRKLEQSS 1440
WD40-rpts
Query 1441 LYSIIKKSSSKESVVHCGKPPLERQASLEGRFRMEESWSAVECKRRSSSIDRASLKLRASQEEVCTGFWNTSKGESTRRT 1520
WD40-rpts
Query 1521 ILQKTKSVESMCLKTKSASSTSIDMFSDCQRATVSQTISTEIASHRREIVAAAFGISTQSLERLLKFVEIIDWENITMNV 1600
WD40-rpts
Query 1601 SQKEQLSANLQALTSAPVNLDIPSDLGRIVAPAEQDAYSDLIMRERAESRVFAQLRASADEITIREVALGSMSQLEQAAF 1680
WD40-rpts
Query 1681 MSLLITSVSRCDLRTIAPSNIIANTEIFYDVAEEKMSVSGVMKRESRKEHSSKKFTSSREEIIQGFWKGERDEERVVKTL 1760
WD40-rpts
Query 1761 KDRMVSFKHSLSVEAASSTSENVSLGMRKADQKSEFTISQKLSPKEIVSEAYGVSESKLDQFFQVMEKMDWSNIELGEKE 1840
WD40-rpts
Query 1841 HTALSANIRTLAPEQKVCDGILGKLKAPKQQDESVGTQIQEIRRATAVMSVRASLLLTISSNSNFSKNISDSEKAVFSNL 1920
WD40-rpts
Query 1921 ISVITSHNLSTIGTSSETTTASISYQDIPEMLAASKLWISRNSEKLKKEIREPVIQTVESFWNTTNDQEKVAVLLNEKID 2000
WD40-rpts
Query 2001 SIYSSLNTLAASMENEIISQELVRHTENAGKVNIKPISPRELVSSSFKITSSDLQQFFNVLEKMDWSQISLPAQEHAIIS 2080
WD40-rpts
Query 2081 KNVRSLAPSASELSNILGKLRAPEMQEETTDLKIRQAQQARVVLNVSESMSNTISSSETFSRIPENKKATLTNLVGIITT 2160
WD40-rpts (_
Query 2161 QDLSTLGASSENQTIEMDYTEAKEELEASKKLVDKNLSVLKTEIRESGDEVVQGFWNTASDKEKVGAIICEKLKSIHHTL 2240
WD40-rpts ___________________________________________________________________WD 1_________
Query 2241 HTHAIRTVTESLSTDIQKEQQKLSTHHFVKLSTRDVVQAAFRISSESVDHLLTLVEKMDWSKIDLVEPVYSNISSNVQAL 2320
WD40-rpts __________________________________________________________)
Query 2321 ATSSSQSSGILGKLLPPAPEEETTSKEIREINTAKCILNVISSLNSTITSDASLDMISESEQAIFSNIIGVMASNNLTTS 2400
WD40-rpts
Query 2401 SQSTSSSFGFNNVFELSEARRVLQESNKQNLIQKVRESSEELIHGIWSTASETEKVAIVVKEKLETVHQAMKTLAIQMAT 2480
WD40-rpts
Query 2481 QSVNSELIGSEGNLASIKSITLPTREVISAAFGISNEVIQKMLEVLTKGEWSTISLPQSEYESISQNVRALAEPSFNCDS 2560
WD40-rpts
Query 2561 ILGKINAPGPQTETTSHELIEKNTAAAVANVKAAVESVISKESSLAKLPADEKAIITNLAGLVLSKDVSSLCTSSETFGF 2640
WD40-rpts
Query 2641 DQRIFRNQNANISLGAVRSETLLQRLREPIENQVQGFWSTASNQEKASFIAKQKLDTMYDTMKVIAIQMISQTIDGDFSS 2720
WD40-rpts
Query 2721 ASISSETFKNIDKAAREVVAAEFGIANESVQKALEVLNKVEWSDISLPEKLHQNISSNVRVLADSSYNCDSIIGKLNAPE 2800
WD40-rpts
Query 2801 PQSAYVDQQISEHQTLEVIANIKSAVSSVISNDSVLSKRSEDEKAVISNIANLIISCDLASMSSTSNSFEFQRDILEPQN 2880
WD40-rpts
Query 2881 ANVLLGTPASQVFTRNLQEPIQSEVQGFWSTNSSQEKASLVIRQKLNVKYDAMKMMATEIAYQSLNSNITSEETNLESQK 2960
WD40-rpts
Query 2961 SFDKSIRESIMASFGVSSEHVQKTLEILSKSELSTIVLPAVEYEATVQNIKALSEPNFNCESILGKLNAPDPQSAVMDII 3040
WD40-rpts
Query 3041 MNEQRKLTVVSNIQSAIESVISNDSSLEKLTEVDKSVILKISEIIVSHDLTALSSSCSDFNLLQESNTQEKADIFLKTPN 3120
WD40-rpts (_________________________________WD 2_________________________________)
Query 3121 SQMLIERLREPIEKQVQGFWSTASNSEKQEMFLKEKVETIHAMLQTFSASLVSETVQRDFMATVQSLAALRSIQLTPREI 3200
WD40-rpts
Query 3201 LCAAFGISNEQIEQTFRGLDEVDWSHIDIPCALRDNLLVNLRIVNADAPNVFGNLISRPDENQETSTVLEEKNRIQFLLN 3280
WD40-rpts
Query 3281 LQRSLDQTVQMTSSLTRSDERIEVKVSNIISLISSENLGDLISQAVQLAQPNMSDETEKSFEIPRNILLNRVVPETSEES 3360
WD40-rpts
Query 3361 IQSFWKTSQLAEEASSTISEKLSMLQSEFVVSAAKQVSTSLTLDYRRKIFNQNSEIIFGDLTRDVVKAAFSVSDETLNTL 3440
WD40-rpts
Query 3441 FSQLEQSDWSQIKLSSKQKSILSANIKSLATSNLDTLIGQLMPREADSEQSEASLSERSSVEMENTFKIQQIIFDTVVRK 3520
WD40-rpts
Query 3521 FGSDEERASIINLIGLLTSVNLKAAIQVASFERLPDSLDSTASITPVFKIQEHVRQPTEQVVQGFWSKERHPNETVEVVN 3600
WD40-rpts
Query 3601 RKIEVLKSILNCYAVAECHKSLERSLEKPSQQDETCATRGVTEVVQNAFAVTEQSYSKILKVLGSMQNFEIPEAVKETIS 3680
WD40-rpts
Query 3681 KNLKILNLPPVDTLLVSKYKESHVSKTVEEQELVQFMFNFKSALNSEIEMSQNVSKCIEEETVVLPNLVAILASANLATI 3760
WD40-rpts
Query 3761 VPTESRQLSDSENILNFSIQHEESERSAATVRDEINILRHYLQTFAIQKASSEVSRVIEIIKTSQSFHLVHTTMLEEIKT 3840
WD40-rpts
Query 3841 IQLRMEVLKRVSMNQSTAEELLQEAFQNSEQQMETFQRIVQNVHWEETKLTEEIIRNLRINMTAIPRFESTVGSLKAPDD 3920
WD40-rpts
Query 3921 QHESADSYISSTRRAEAVINLMAAADNAISTSSTLSMMESDERLLHKTILKTMAVCNLTTPASRSETETMTQGFYQKVEQ 4000
WD40-rpts
Query 4001 CQTEQELAERPKINCEMKVLEISDDEVHGIWSSRKEQESSQKILLASELEKATLQTLASGDETNSIYTELASFGTREEIE 4080
WD40-rpts
Query 4081 KLVSIELRDIVEKSFGVSEESLNKLLNLIPKMDWSSLTMPIVQKELVIKNLALLLPAEALIMESVGTIQAPPEEEAFAEL 4160
WD40-rpts
Query 4161 DLKQAREAKVMMDIQECVFTTCTGYTEMNKPDDAEITTFSALLGTLSICDLVTMASSNIQVDSKYDYYRRPAPKNAETTF 4240
WD40-rpts
Query 4241 TESNADAFSLALQEAGEVTSSGIWSTVSNSDAAKTTVSDKLISISKTEMSMKAVSENAVNQDHSLKKDSIEAVEMNIPDS 4320
WD40-rpts
Query 4321 RKEILQKNYSIDRSNSTVEMQGAIASEDIAIQYSAPRVDNVSQTMRSQSQKDLLFGGSFGELEPPLPQEEDVETTARQSR 4400
WD40-rpts
Query 4401 VYRSSSQVRAPSEESIQKTEALRRSESLESNARKTFVDRRRENVSLSRKASVERETNMEARVAKADQSIPVETLQKSKKQ 4480
WD40-rpts
Query 4481 ESIFSSVVESKDLNVCGSWTTAKPPIGAKVSLQTKKVEKEVTSATMTVASASVECEVGLESKREQSRDATGSMVRAKSIE 4560
WD40-rpts
Query 4561 EVEREFGVEVTSTEKTLEKRDQIESWIKSIPQRLEVEESAEFGNDEVIIGGVMGSLEAPLEQEEETEKLLTMKRSASEAR 4640
WD40-rpts
Query 4641 SLKAATKESIEEADEFSKIEADQEILTVQKELVKATGILNAAASREINASSKMEYSKVPSEDVIELSLTESRRQSNSGQF 4720
WD40-rpts
Query 4721 KETKEEEIVGLWNTGTKGENASKVLPHKPPIDTASMKAKAAKQNSIEMTGSLQKSPSAEAMGIVSQKVTEGANSKFGIAQ 4800
WD40-rpts
Query 4801 GAVETTLTASAQSGVTCRDISVSNIGVASETVTQFSNKETGIGFGASNLIAPPPESAETEFTGKISNLSQTSLNKMAASD 4880
WD40-rpts
Query 4881 VGTTVESKIQAPGDNYGDVSLLQKVASSDAITKAMQASRDSAISVDFRQDRETVSAEKSDLNFKSTNSETQKLKLFESKE 4960
WD40-rpts
Query 4961 EESGIFIRSSHEYEETQKTLRHRSASRESASRTVTAPTNQEVQMNFDKKVEDSVAEGSLSIGIVRESSQSEVMQHAERTS 5040
WD40-rpts
Query 5041 ELTKLSMNEEVAGVRAVSETTNETFRGYQQGDVEVQTGAAMGRIEAPRPQRGEAEITQKLRRTLSVERSAKASEMAESQT 5120
WD40-rpts
Query 5121 VTQIQKREDSLASEYSVRDTLLLKSSSVSHVATEQMSEHLVMRSKSEHHISEKLQERLIEKESFSSQEFISENQGVHTHW 5200
WD40-rpts
Query 5201 DVIDNNGDALICWKSSETEQKSLDAKQVTEELAGTTLDLSVRLLGGTDEEKIAEHVIVGASEVLNISETRADMEMSRQDA 5280
WD40-rpts (__________________________________WD 3_________
Query 5281 FSDDATYVASDILEERSLSTVHEFGESEASTTFGVGKLVTKKPEKEEVGRSFSETRKLSQFSDITAISETTTDMDSEILR 5360
WD40-rpts _________________________)
Query 5361 LPECDQSVTLISHKNQQKDVKDLKATVENTADQVTLLEKREVREQSADVKKKKFEVEDIEEVLPMIRRWAEILSMKASTS 5440
WD40-rpts
Query 5441 VEIQAENKLSKPEAQAESQKYLKTANLEINKINVNATHEEVMSATTALECKTSGQDVASIRLRDKSRERVEKKYQENQWN 5520
WD40-rpts
Query 5521 LLSTNAEWETLLNDLEDSVTIAQSVQDSMAFSVKASATVNLNSDTSIKKAQPEIGIQKSISQSNVEKTVGQFSSATIGNE 5600
WD40-rpts
Query 5601 LLVTRLGMDLEEIETLVDEINREQAVGGRIREFGKSETGGGIYLVRRALPKVKETSTHTVTVATSFRQIFSTMSAGDEIS 5680
WD40-rpts (________________________WD 4____
Query 5681 EANVELTIPSTSVGAEIKSTVARSDSMTFSTSHASEYTASTVADYARDIAVSASTAARKKAIPTERTSQKLKEVGADGIE 5760
WD40-rpts ____________________)
Query 5761 ILSLWEGIETDLDATTQLVDLLRVKSSLQTIESSEEVERINQYLEMPEEKGLVIHLINVQNKETCERNFAVSICSLDTVH 5840
WD40-rpts
Query 5841 SRKSEIPPTYSVSKVLTEKRVLRETWRVIESGDVRFNAVINLHRYSLSKPTLAQETVLREVVRIAAQPLFISAEPTYMRT 5920
WD40-rpts
Query 5921 KESSEDIVGVGIAYNVPEENLISAIKLDEKASGGCYELTTKAAGDEYKMISSILSKTQAVEKVKGKMIQKVVAKDEIRVL 6000
WD40-rpts
Query 6001 ETTTESVNANFNYEIPEENFKIGIAKTCANNAAPFTMRLHECLDFYVKMFYNMNKKDDFESLIKTIIISNGIESKTLSCT 6080
WD40-rpts
Query 6081 AAEHIEATRNPEFNRPAEFSDIQKTVVDYNKIEGASLNTFEALNEKMALSTMLSRQDDYSRVEHIVKDKNRGANLKFRFI 6160
WD40-rpts
Query 6161 ESSEEKQTTFSAFEIDTEKEEIERTIDLVRQGGQFKLSTDAAEENEITLHRDISKPIITHYDTLHLITLSNSAPHQILST 6240
WD40-rpts
Query 6241 SGASNELHTISTQLSKPAEWLNTELLIVDKNVEQPVTWRVLECEECVENLHPIYRRPDDIFDLDEIWHIARNGGKFERRC 6320
WD40-rpts
Query 6321 KASGDEKEIFEQEIKSRGIKDDIIDKKFIVGNQGEPTSFTTIQTSSVSASVSQDMSRLGEKEAIKKVLQNSNKGINVEKK 6400
WD40-rpts
Query 6401 MIEATEYRETISEQFRKNDEFDKADLTVKDRRAGGSYELSTNASEQSSSSVSNELICPRPSQLSIEKTFITAQTIIPAIL 6480
WD40-rpts
Query 6481 SCKASESIGHTISEQWNRPNDQFAISQIVKDCNKENEQFTFREAGEEYHTTNCFYTREQEEKVIAKTLHEARKGSGQTFE 6560
WD40-rpts
Query 6561 TKHATDRSMDASQHLEKDRLAEATAEKLFVIGNTAGPVSYSSKSSSDIQHSQVVNLSRPSPYVQVEIIRKGANLGTPTYF 6640
WD40-rpts
Query 6641 HARETTSKTENVATQLSRKEEKMEVSTTHTTPLLAEPVTFDSNASKSHSTSLDKNLVASEDYELDAVVIIVDNNTEQPQF 6720
WD40-rpts
Query 6721 FRCSCTKEASTSAAAALSAGSKSESCKIVRLASNLGHPTSLVLCESSSVQETNNVHYQRDEHHEHISETKSYPRDGGKFT 6800
WD40-rpts
Query 6801 LDTKASTANEVRIDKDLEKKSDRELETEIKTIVRNEGEPVEIFVSATEESAAGVTTSLSRANPFESANILLTSPNKGEPA 6880
WD40-rpts
Query 6881 YSRVTESSELTETNNVQLRREEEHQETEKIIEIAANGGSSLLRAGFADEKFADIEAKLGKDAQFESAQTIRQIGNEDKTN 6960
WD40-rpts (______
Query 6961 LSIGASQETSVTFDETVQCNKSSCEETSITKVAKNIEPHVIFRSTEASDMAVGIHYTLRSSEKVEETEEIKNIARNGGSA 7040
WD40-rpts _______________WD 5____________________)
Query 7041 TFSCFASGDESPDSVSAFLTRQPQEETTEKLFPTPMFDFIKFNSTAAEEFAVWNTTIFRRKDNEGEVEKIFNTSEAGHNE 7120
WD40-rpts
Query 7121 TFSANAAEDVSVTLDADLHFGVGYKEHRQITKDEANQGEGTGMHSGASEETIFNLGYDYCKQPTEFTTVCVTEDKLLIQG 7200
WD40-rpts
Query 7201 AYGFRAAKEESITLDADLHFGVNYRDLLAMGLHASNNEIEGTGMRSTASEETIFNLAYDYCKQPTEFRTVFVSEDHQFVH 7280
WD40-rpts
Query 7281 GAFGFRAVGEEHIETQVLELQARMVEVMVEGSVHNLARRHEDEPFVLYTEVIEETIIRVDEQLEKKTTVIETEQASEVKM 7360
WD40-rpts
Query 7361 REKGEERRKEEKRVSFAAEVQEKTMEAIDKSLGLDTSMEVEPAFQKPSIIKKPMKKERERRSRDLRQNAAPAFKPVRRNS 7440
WD40-rpts
Query 7441 LLQALAIGSPHNIPHFKTLDDIVKAIKHAGLEYSNLIFGIDYTKSNFYQGERTFDKRPLHTIDPAEMNPYQQVIQIVGKT 7520
WD40-rpts
Query 7521 LSSFDADGQIPAYGFGDEEFTDHGIFNIAERYDLEKDCNGFEEVLRVYNEVTPTIEMSGPTNFVPLIDRAIEICKEKHSY 7600
WD40-rpts
Query 7601 HILVIVADGQVTNEKINQKAIAAASHYPLSIIMVGVGDGPWNMMGRFDDNIPKRLFDNFHFVDFHKVMFNAPNADASFAL 7680
WD40-rpts
Query 7681 NALMEIPDQYKAIKELGLLKHSRRG 7705
WD40-rpts
 5 WD40-repeats found in QUERY=B0228.4c (Len=7705): (Red - Z-score>4.0) Rpts Segment Boundary Z-score Score P-value Identities SS-score WD 1: Seg 43 2159-2299 3.32 251.82 0.02487 25.0% 10.51 WD 2: Seg 49 3042-3113 3.13 243.94 0.03166 20.0% 11.80 WD 3: Seg 79 5233-5306 3.57 262.32 0.01801 30.0% 9.45 WD 4: Seg 86 5648-5701 3.18 245.97 0.02975 22.5% -3.61 WD 5: Seg119 6954-7000 2.89 233.91 0.04298 27.5% 3.69Multiple sequence alignment of 5 WD40-repeats: (BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED) WD 1 2159-2299 TTQDL----STLGAS-----------S------------ENQT--------------IEMDYTEAKEELEASKKLVDKNLSVLKTEIRE---SGDEVVQGFWNTASDKEKVGAIICEKLKSIHHTLHTHAIRTVTE-------SLSTDIQKEQQKLSTHHF-----------VK----LSTRDVVQAAFRISSESVDHLLTLVEKMD WD 2 3042-3113 NEQRK----LTVVSNIQSAIESVISND------------SSLE--------------KLTE---VDKSVILKISEIIVS---------H---DLT-------ALSSSCS--------------------------D-------F----------------N----LLQESNTQE----KA--------------------------D WD 3 5233-5306 AGTTLDLSVRLLGGT-----------DEEKIAEHVIVGASEVL--------------NISE-----------------T---------RADMEMS-------RQDAFSD--------------------------D-------A----------------TYVASDILEERSLSTVHEFG--------------------------E WD 4 5648-5701 ALPKV----KETSTH-----------T------------VTVATSFRQIFSTMSAGDEISE-----------------A---------N---VEL-------TIPSTSV--------------------------G-------A----------------E-----------IK----ST--------------------------V WD 5 6954-7000 GNEDK----TNLSIG-----------A------------SQET--------------SVTF-----------------D---------E---TVQ-------CNKSSCE--------------------------ETSITKVAK----------------N-----------IE----PH--------------------------V WD40 Template TGECL----RTLSGH-----------T------------SGVT--------------SVSF-----------------S---------P---DGK-------RLVSGSE--------------------------D-------G----------------T-----------IK----VW--------------------------D |
|
Copyright © 2012-2015 Ziding Zhang's Lab, China Agricultural University Powered and maintained by Chuan Wang Last modified: 09 Jan 2019 |