Input parameters:
Query = B0228.4d (Len=1379)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (B0228.4d, Len=1379):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNDYEIRDLTGSSQKSNNQKISNNSGESAHFNGTSENVKTESDDDSTCSSSLNKLSNRHSEPMNHLSVGGFVAKDLLSSL 80
WD40-rpts
Query 81 TIPLPQTVIRTCQSIDIDTPDRSRNDKTLTSFFYSSCKNLLLTTIIPDPLDLVAAAVGQSTAQALLVAQIGWMVCVCCRC 160
WD40-rpts
Query 161 CLCKCIANGRGVRGQKKQIQEPTIADDDGRDLPYEVPGSIHIPKPVYNKKLSKSRSSSVPHVSVPSLVSSSADYKRLSMW 240
WD40-rpts
Query 241 ETSLNVESDVEPLHTPPLVVGRKLDYIDKEGNNPSCCRERGTRKPGFRPLRGSGSPPPPDPSTSTKVAVTSASEVKKIKD 320
WD40-rpts
Query 321 HKKQLKKEKEKKKKMDKKQSSSGGGFFTRWFGGSGSNNSQQNLAEDVIDARSERKTAKQREQELLQRSERRSGGRTHSHE 400
WD40-rpts
Query 401 EYRRHQQPSLMVNTNFDEDDYATIDRVRRSNNREMSMPASPRNVHFVDETSGPLSRTMNESAFGDRAHLQYRPRAQKGAA 480
WD40-rpts
Query 481 GPTTRGAPTSSVNQLDEATLDLLRLSTEPSPVPSRRALPKSASLSSVQQKQPIKTADGGQLKIGSVYTWDQNSVDTTTDD 560
WD40-rpts
Query 561 ERAKDFLRGDRSSRLSPQSERKNERQIQIRQQSSGPTNRRETEIEYEEKRQGPPVVRTTVEGKLKMEKIVGADLITVDSC 640
WD40-rpts
Query 641 ISSAWTVRDTVTNYKIKSTIGKKSLILEEIKDGQSKYKITLIENGETKMEREASLDVPDFVNKKDYLAEVSKKLLSDLRE 720
WD40-rpts (_________________WD 1_________________)
Query 721 DSESVSALTHIEVEIVEDVTNILKTYVIGERADDVLAEEQLRLHYEQTADKTPSPIPLEKVEKIYVDELQKDKIELEDPE 800
WD40-rpts
Query 801 KADIHLIKDGRHFEGEGALKRIRRFETEESIEKPTVIRMEPRCAHAFADCDVAKKDDTSNYTVKIAVPLVHTITFLLKKS 880
WD40-rpts
Query 881 KMMRQQKAAGYEMEQEGQRFEDETTLRRIKRYETEEEEEKQHVAVIQHVEEVKVATMKTQREVEAEGGQYEMSQEGIHLR 960
WD40-rpts
Query 961 GETTFKKRGKHLDSESSEERFMEREAEGGQYAMQMEGERLLGEKKFRSKGRHYESESEESMASWNGGSPTLVDLVKKESS 1040
WD40-rpts
Query 1041 SIFEATFETANNHSPIVAEVRRPKLKKENTTIGCTISNQKATSANAELTTKHVNTEKGSGKFRELGEEQAMMLCGFENQK 1120
WD40-rpts
Query 1121 SSKEEVTGSRQQKNEIKVAFAAGSAETENTTISTTIFHDADSFAVEGSSKSANSTATYGRFKEMSEENASNMVYLQKSES 1200
WD40-rpts
Query 1201 SSSNLSGAETKMKHIQRQSSEARFSEFKQVAESCAVMIKNTGVERGSTSSTVAEAATDLRIRRKDAKGEIIVFVLFKRVF 1280
WD40-rpts
Query 1281 GNYVHASMRLASSGSGLLRENRSELREMRSEEKRSNSMHHEESHYAHSSYEHTSEHYSQSSFYHQESSSSVRSSSIYIEL 1360
WD40-rpts
Query 1361 GDDMEIICEHNTKQAILVY 1379
WD40-rpts
1 WD40-repeats found in QUERY=B0228.4d (Len=1379):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 12 652-691 3.45 257.36 0.02098 17.5% 30.88
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 652-691 TNYKIKSTIGKKSLILEEIKDGQSKYKITLIENGETKMER
WD40 Template TGECLRTLSGHTSGVTSVSFSPDGKRLVSGSEDGTIKVWD