Input parameters:

  Query = B0280.9 (Len=429)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (B0280.9, Len=429):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSKRPVIESEKPAWHDEDDDNMVVAVPKKVKMTMRVELKRTTDEEHGELDSKEYVGRLQEAFRKRHGGTPKWAKAAAGDE 80  
WD40-rpts                                                                                      

Query       81 EEGSLLKTAAGYLAKDVNLPKTTIHTTLIKDFNIGHRYTRGITVVKFHKTRPVLIVADQGGNVQLFKVSREVKKDRFLQS 160 
WD40-rpts                                     (_______________WD 1_______________)       (_____

Query      161 ANFSKFPIDSLEIADKGHSVICSSSRKEYLMQYNMETREVTQLKPPNTVPKQGIRLFAISHDSQFLAIAGHNSHIYVLHA 240 
WD40-rpts      ____________WD 2_________________)   (__________________WD 3__________________) 

Query      241 TSMEHITTISLPANASEIKFFPSHSREIWIICETGQIVIANIGLPGTKSSQHTFTDDGAVHGTTLAISQHGDYFATGSDT 320 
WD40-rpts        (_________________WD 4________________)   (___________________WD 5____________

Query      321 GIVNVYSGNDCRNSTNPRPLFNVSNLVTAVSSIAFNSDAQLMAICSNVKDNHLRLVHVASQTTFKNFPERNGKVTHARCV 400 
WD40-rpts      ______)(______________________WD 6______________________)(____________________WD

Query      401 EFSPNGGYMAVGNDDGRLHVFEIHHFTDY 429 
WD40-rpts       7___________________)       

7 WD40-repeats found in QUERY=B0280.9 (Len=429):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   112-147      7.27  414.84  0.00016       17.5%     46.49
  WD 2:  Seg  5   155-194      6.07  365.51  0.00074       12.5%     52.30
  WD 3:  Seg  9   198-239      6.36  377.57  0.00051       20.0%     56.18
  WD 4:  Seg 13   243-281      7.49  423.93  0.00012       17.5%     55.12
  WD 5:  Seg 17   285-327      6.66  389.88  0.00035       20.0%     45.95
  WD 6:  Seg 21   328-377      6.49  382.63  0.00043       22.5%     52.66
  WD 7:  Seg 25   378-422      8.01  445.38  6.2e-05       25.0%     47.39

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  112-147    -----------------FNIGHRYT---R----GITVVKFHKTR-PVLIVAD--QGGNVQLFK
   WD 2  155-194    -D-----RF--------LQSANFSK---F----PIDSLEIADKGHSVICSSS--RKEYLMQYN
   WD 3  198-239    -R-----EV--------TQLKPPNTVPKQ----GIRLFAISHDS-QFLAIAG--HNSHIYVLH
   WD 4  243-281    -M-----EH--------ITTISLPA---N----ASEIKFFPSHS-REIWIIC--ETGQIVIAN
   WD 5  285-327    -P-----GT--------KSSQHTFT---DDGAVHGTTLAISQHG-DYFATGS--DTGIVNVYS
   WD 6  328-377    GN-----DCRNSTNPRPLFNVSNLV---T----AVSSIAFNSDA-QLMAICSNVKDNHLRLVH
   WD 7  378-422    VASQTTFKN--------FPERNGKV---T----HARCVEFSPNG-GYMAVGN--DDGRLHVFE

   WD40 Template    TG-----EC--------LRTLSGHT---S----GVTSVSFSPDG-KRLVSGS--EDGTIKVWD