Input parameters:
Query = B0310.3 (Len=445)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (B0310.3, Len=445):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MPIKCMFPAVNILKFLYTHTPRSFLFILDEKKFSNQMEGNFLNNPWINCCFVTTYAGVVAQYFKKGAEWFNFTTPSIGTF 80
WD40-rpts
Query 81 TNEQNEEDSSNYSTSGYDSSAETISANSSPINRSGVRSRISQKQRQRILKEAHFKAQQLNRKMVVQKSCPPDHEIKPVPS 160
WD40-rpts
Query 161 KFYQFDAITDFGFGGPVLLVGMQKDVEVMKLETKEKARSGRKKNRKSKYKCNMYKMTKLAQIVAKIPKKKEVIEIDEDGF 240
WD40-rpts (________________________________WD 1_____________________
Query 241 QKVSSKKAAKLRTLKPADVPTPPTKVVENKEEVIKLEVIEQPEPIVLPVSTPTVTFSRFEEMKRVVKVEKAQESAKTKAL 320
WD40-rpts ___________)
Query 321 KKSKAISISRHVGFLQILEKLEETEEKPQVENEKKVVVKHVQSARKNQKKGRKNRKVEPPKEEFEPYEEDHYNFKRYFLI 400
WD40-rpts
Query 401 IGVYVLVFIYVCTNVLTVGVSYEFPYITLANKSEKNWDSLFSKCV 445
WD40-rpts
1 WD40-repeats found in QUERY=B0310.3 (Len=445):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 6 183-252 3.02 239.52 0.03622 20.0% 26.11
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 183-252 QKDVEVMKLETKEKARSGRKKNRKSKYKCNMYKMTKLAQIVAKIPKKKEVIEIDEDGFQKVSSKKAAKLR
WD40 Template TGECLRTL------------SGHTSGVTSVSF-----------SPDGKRLVSGSEDGTIKVW-------D