Input parameters:
Query = C04F12.7 (Len=202)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C04F12.7, Len=202):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGCLSSIEAPLCAVITVIFLVSGLYSTAYKVAGSKTVLDETALDTKDMLMTALALMSLIGLCSTRRAFGVFTLLFMMHAF 80
WD40-rpts (_______________________________________________________________________________
Query 81 VFSAFHLAHTIALFIKSFDSPCQYLKTPSTGTLNSDICHAVNGVTLVCAVISMIATALASMAVFIRLTTVVVKISDKRVM 160
WD40-rpts __WD 1__________________________________________________________________________
Query 161 ATSRSFDNSMPQLISRKSIESEKEEDCLETPRRKMGQADIFV 202
WD40-rpts ______)
1 WD40-repeats found in QUERY=C04F12.7 (Len=202):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 1 1-167 2.96 237.09 0.03901 20.0% 3.97
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 1-167 MGCLSSIEAPLCAVITVIFLVSGLYSTAYKVAGSKTVLDETALDTKDMLMTALALMSLIGLCSTRRAFGVFTLLFMMHAFVFSAFHLAHTIALFIKSFDSPCQYLKTPSTGTLNSDICHAVNGVTLVCAVISMIATALASMAVFIRLTTVVVKISDKRVMATSRSFD
WD40 Template TGECLRTL-----------------------SGHTSGVTSVSFS---------------------------------------------------------------PDGKRLVS-------GS------------------------------EDGT----IKVWD