Input parameters:

  Query = C04F6.4a (Len=611)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C04F6.4a, Len=611):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 80  
WD40-rpts              (_________________WD 1_________________)________________WD 2____________

Query       81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 160 
WD40-rpts      ______)(____________________WD 3____________________)   (_________________WD 4__

Query      161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 
WD40-rpts      _______________)   (_________________WD 5________________)          (___________

Query      241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320 
WD40-rpts      ______WD 6________________)   (_________________WD 7_________________)   (______

Query      321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 
WD40-rpts      ___________WD 8________________)(__________________WD 9__________________)      

Query      401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480 
WD40-rpts      (________________WD10________________)(________________WD11________________)    

Query      481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSV 560 
WD40-rpts      (_________________WD12________________)(____________________WD13________________

Query      561 IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVPF 611 
WD40-rpts      ___)     (_________________WD14________________)   

14 WD40-repeats found in QUERY=C04F6.4a (Len=611):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-48       4.35  294.54  0.00666       15.0%     17.22
  WD 2:  Seg  4    46-87       8.55  467.76  3.1e-05       27.5%     48.21
  WD 3:  Seg  8    88-133      6.25  372.86  0.00059       20.0%     54.72
  WD 4:  Seg 12   137-176      8.11  449.78  5.4e-05       32.5%     55.82
  WD 5:  Seg 16   180-218      9.15  492.65  1.4e-05       35.0%     58.26
  WD 6:  Seg 21   229-267      9.11  490.99  1.5e-05       35.0%     46.17
  WD 7:  Seg 24   271-310      6.29  374.61  0.00056       20.0%     54.73
  WD 8:  Seg 28   314-352      9.46  505.43  9.6e-06       37.5%     56.25
  WD 9:  Seg 32   353-394      4.92  318.04  0.00322       15.0%     47.74
  WD10:  Seg 35   401-438      4.93  318.51  0.00317       15.0%     44.37
  WD11:  Seg 39   439-476      7.64  430.35  9.9e-05       17.5%     55.97
  WD12:  Seg 43   481-519      7.53  425.83  0.00011       22.5%     56.43
  WD13:  Seg 47   520-564      8.83  479.51  2.1e-05       37.5%     49.66
  WD14:  Seg 51   570-608      7.44  421.80  0.00013       17.5%     56.08

Multiple sequence alignment of 14 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     LFP-----SL-------PR-TARGTAVVLGNTPAGD-KIQYCNGTS--VYTVPVGS
   WD 2   46-87     VGS-----LTDTEI---YT-EHSHQTTVAKTSPSGY-YC--ASGDV--HGNVRIWD
   WD 3   88-133    TTQ-TTHILK--TT---IP-VFSGPVKDISWDSESK-RI--AAVGEGRERFGHVFL
   WD 4  137-176    -GT-----SN--GN---LT-GQARAMNSVDFKPSRPFRI--ISGSD--DNTVAIFE
   WD 5  180-218    -FK-----FK--ST---FG-EHTKFVHSVRYNPDGS-LF--ASTGG--DGTIVLYN
   WD 6  229-267    EDD-----SL--K----NV-AHSGSVFGLTWSPDGT-KI--ASASA--DKTIKIWN
   WD 7  271-310    -LK-----VE--KT---IPVGTRIEDQQLGIIWTKQ-AL--VSISA--NGFINFVN
   WD 8  314-352    -GS-----ID--QV---RY-GHNKAITALSSSADGK-TL--FSADA--EGHINSWD
   WD 9  353-394    IST-----GI--SNRVFPD-VHATMITGIKTTSKGD-LF--TVSW---DDHLKVVP
   WD10  401-438    -DS-----SK--AV---AN-KLSSQPLGLAVSADGD-IA--VAAC---YKHIAIYS
   WD11  439-476    HGK-----LT--EV---PI-SYN--SSCVALSNDKQ-FV--AVGGQ--DSKVHVYK
   WD12  481-519    -SV-----SE--VK---TI-VHPAEITSVAFSNNGA-FL--VATDQ--SRKVIPYS
   WD13  520-564    VANNFELAHT--NS---WT-FHTAKVACVSWSPDNV-RL--ATGSL--DNSVIVWN
   WD14  570-608    -DH-----PI--II---KG-AHAMSSVNSVIWLNET-TI--VSAGQ--DSNIKFWN

   WD40 Template    TGE-----CL--RT---LS-GHTSGVTSVSFSPDGK-RL--VSGSE--DGTIKVWD