Input parameters:

  Query = C04F6.4b (Len=517)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C04F6.4b, Len=517):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVH 80  
WD40-rpts              (_________________WD 1_________________)________________WD 2____________

Query       81 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRP 160 
WD40-rpts      ______)     (__________________WD 3_________________)   (_________________WD 4__

Query      161 FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG 240 
WD40-rpts      _______________)   (_________________WD 5________________)          (___________

Query      241 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVR 320 
WD40-rpts      ______WD 6________________)(___________________WD 7__________________)   (______

Query      321 YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGV 400 
WD40-rpts      ___________WD 8________________)(__________________WD 9__________________)(_____

Query      401 DSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGA 480 
WD40-rpts      ______________WD10___________________)(________________WD11________________)    

Query      481 SVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVSF 517 
WD40-rpts      (______________WD12______________)   

12 WD40-repeats found in QUERY=C04F6.4b (Len=517):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     9-48       4.21  288.53  0.00803       15.0%     14.06
  WD 2:  Seg  4    46-87       8.65  472.07  2.7e-05       27.5%     47.03
  WD 3:  Seg  7    93-133      6.43  380.27  0.00047       17.5%     49.21
  WD 4:  Seg 11   137-176      8.27  456.35  4.4e-05       32.5%     56.26
  WD 5:  Seg 15   180-218      9.20  494.76  1.3e-05       35.0%     56.53
  WD 6:  Seg 20   229-267      9.08  489.70  1.6e-05       35.0%     46.46
  WD 7:  Seg 23   268-310      6.42  379.66  0.00048       17.5%     53.62
  WD 8:  Seg 27   314-352      9.61  511.75  7.9e-06       37.5%     55.99
  WD 9:  Seg 31   353-394      5.02  321.84  0.00286       20.0%     51.45
  WD10:  Seg 35   395-438      5.55  344.02  0.00144       17.5%     50.77
  WD11:  Seg 39   439-476      7.95  443.10  6.6e-05       17.5%     54.60
  WD12:  Seg 42   481-514      3.85  273.56  0.01274       22.5%     45.94

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    9-48     LF-----PS---L-------PRTARGTAVVLGNTPAGD-KIQYCNGTS--VYTVPVGS
   WD 2   46-87     VG-----SL---TDTEI---YTEHSHQTTVAKTSPSGY-YCA--SGDV--HGNVRIWD
   WD 3   93-133    -H-----IL---K--TT---IPVFSGPVKDISWDSESK-RIA--AVGEGRERFGHVFL
   WD 4  137-176    -G-----TS---N--GN---LTGQARAMNSVDFKPSRPFRII--SGSD--DNTVAIFE
   WD 5  180-218    -F-----KF---K--ST---FGEHTKFVHSVRYNPDGS-LFA--STGG--DGTIVLYN
   WD 6  229-267    ED-----DS---L--K----NVAHSGSVFGLTWSPDGT-KIA--SASA--DKTIKIWN
   WD 7  268-310    VA-----TLKVEK--TI---PVGTRIEDQQLGIIWTKQ-ALV--SISA--NGFINFVN
   WD 8  314-352    -G-----SI---D--QV---RYGHNKAITALSSSADGK-TLF--SADA--EGHINSWD
   WD 9  353-394    IS-----TG---I--SNRVFPDVHATMITGIKTTSKGD--LF--TVSW--DDHLKVVP
   WD10  395-438    AGGSGVDSS---K--AV---ANKLSSQPLGLAVSADGD-IAV--AAC---YKHIAIYS
   WD11  439-476    HG-----KL---T--EV---PISYN--SSCVALSNDKQ-FVA--VGGQ--DSKVHVYK
   WD12  481-514    -S-----VS---E--VK---TIVHPAEITSVAFSNNGA-FLV--ATDQ--SRK-----

   WD40 Template    TG-----EC---L--RT---LSGHTSGVTSVSFSPDGK-RLV--SGSE--DGTIKVWD