Input parameters:

  Query = C05C10.6a (Len=858)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C05C10.6a, Len=858):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADDGLGDVPMETESMPQYTISHVIEAHKSDTKALAVTQGGCLISGGRDETVKFWAKKGKQYTKTHAFEQPKGITVNSIA 80  
WD40-rpts                        (________________WD 1________________)      (_________________

Query       81 YAELADGWRLFVGRRDGTIAVFGPSQAEPYAIFNEHKQNVCCLHINEKATHMLSGSWDSNVIIWPITELNSSSFTTIVCP 160 
WD40-rpts      _WD 2_________________)   (_________________WD 3________________)       (_______

Query      161 GHTLSVWALASFPDLPNTYLSASADKTIRMWFGDTTLSVFKGHTDVVRALVVLSSSHFLSAGNDGHIIHWDVASASILRK 240 
WD40-rpts      __________WD 4_________________)(_________________WD 5________________)   (_____

Query      241 FATQAHEFIYSMTLSDSHILTTGEDGTLEFWAIDGGKDGNLAIVSEAVIQLPTTNTWDAKVLLNSDIAVAGSDGRIYIMT 320 
WD40-rpts      ___________WD 6________________)          (________________WD 7________________)

Query      321 TDKNRKADDDILDAFDAEVVAKLTAKTERMKQEEHETVTIKVDIDDRPTQLNLKYKKGTDPGLCAQEFLSENNLPIHYLE 400 
WD40-rpts         (__________________WD 8_________________)     (_________________WD 9_________

Query      401 EITRFIKDRIPEARAFDLKSGKKVIVDGKEYDYALGVNFGKGEPDKQMPFNVNESPQFAAQRFVERHQLPVSVIPSLAGM 480 
WD40-rpts      _______)                                                                        

Query      481 ISQEMDKLSKGAASAQSGYEDPFTGPGRYVPQGSSNSGGHGADPFTGSGRYVPQASNSSGFDTGFSGDPLTGDGGYRASA 560 
WD40-rpts                                                                                      

Query      561 PENTGSHAVPLSSLPQNKKKPRGPLVPVPDFYIIGLAGKGEKAIAKLKELNEKQDAFQLNPDQINGLEELFVLPTSSNYS 640 
WD40-rpts                                                                                      

Query      641 SEVTQSAFEMSLQWPVEHLTPVLDFLRIALTHHSLNSYFCDRERGQELVGRLIAILVSDPADVALKVLVCRCIANAFSHP 720 
WD40-rpts                                                                                      

Query      721 VGRNLFASTELSTLAPLVVRQVLNEKTVLQMSAATALANWSLALLQQSEQCEQLGPKEDLLRAILNGIESVDSFGYLGED 800 
WD40-rpts                                                                                      

Query      801 AIIRLLQALVTVMWGDASVIRLAKNRNIAQIAARLKDAVSNDSGKNIARDIVEMTYAV 858 
WD40-rpts                                                                

9 WD40-repeats found in QUERY=C05C10.6a (Len=858):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    19-56       6.70  391.39  0.00033       25.0%     54.62
  WD 2:  Seg  6    63-103      5.62  346.70  0.00132       30.0%     50.29
  WD 3:  Seg  9   107-145      8.18  452.69  4.9e-05       20.0%     45.97
  WD 4:  Seg 13   153-192      6.94  401.39  0.00024       30.0%     51.08
  WD 5:  Seg 17   193-231      7.65  430.56  9.8e-05       27.5%     47.02
  WD 6:  Seg 21   235-272      5.13  326.39  0.00248       20.0%     51.24
  WD 7:  Seg 25   283-320      4.13  285.22  0.00889       10.0%     48.64
  WD 8:  Seg 28   324-364      4.41  296.84  0.00620       17.5%     31.59
  WD 9:  Seg 32   370-408      5.54  343.52  0.00146       17.5%     46.56

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-56     -YTISHV--IEAHKSDTKALAVT--QG-G-CLISGGRDETVKFWA
   WD 2   63-103    -TKTHAF--EQPKGITVNSIAYAELAD-GWRLFVGRRDGTIAVFG
   WD 3  107-145    -AEPYAI--FNEHKQNVCCLHIN--EK-ATHMLSGSWDSNVIIWP
   WD 4  153-192    -SFTTIV--CPGHTLSVWALASF--PDLPNTYLSASADKTIRMWF
   WD 5  193-231    GDTTLSV--FKGHTDVVRALVVL--SS-SH-FLSAGNDGHIIHWD
   WD 6  235-272    -ASILRK--FATQAHEFIY-SMT--LS-DSHILTTGEDGTLEFWA
   WD 7  283-320    -IVSEAV--IQLPTTNTWDAKVL--LN-SD-IAVAGSDGRIYIMT
   WD 8  324-364    -NRKADDDILDAFDAEVVAKLTA--KT-ERMKQEEHETVTIKVDI
   WD 9  370-408    -QLNLKY--KKGTDPGLCAQEFL--SE-NNLPIHYLEEITRFIKD

   WD40 Template    TGECLRT--LSGHTSGVTSVSFS--PD-GKRLVSGSEDGTIKVWD