Input parameters:

  Query = C05C10.6b (Len=860)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C05C10.6b, Len=860):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MADDGLGDVPMETESMPQYTISHVIEAHKSDTKALAVTQGGCLISGGRDETVKFWAKKGKQYTKTHAFEQPKGITVNSIA 80  
WD40-rpts                        (________________WD 1________________)      (_________________

Query       81 YAELADGWRLFVGRRDGTIAVFGPSQAEPYAIFNEHKQNVCCLHINEKATHMLSGSWDSNVIIWPITELNSSSFTFQTIV 160 
WD40-rpts      _WD 2_________________)   (_________________WD 3________________)(______________

Query      161 CPGHTLSVWALASFPDLPNTYLSASADKTIRMWFGDTTLSVFKGHTDVVRALVVLSSSHFLSAGNDGHIIHWDVASASIL 240 
WD40-rpts      ________WD 4_____________________)(_________________WD 5________________)   (___

Query      241 RKFATQAHEFIYSMTLSDSHILTTGEDGTLEFWAIDGGKDGNLAIVSEAVIQLPTTNTWDAKVLLNSDIAVAGSDGRIYI 320 
WD40-rpts      _____________WD 6________________)          (________________WD 7_______________

Query      321 MTTDKNRKADDDILDAFDAEVVAKLTAKTERMKQEEHETVTIKVDIDDRPTQLNLKYKKGTDPGLCAQEFLSENNLPIHY 400 
WD40-rpts      _)            (_____________WD 8_____________)     (_________________WD 9_______

Query      401 LEEITRFIKDRIPEARAFDLKSGKKVIVDGKEYDYALGVNFGKGEPDKQMPFNVNESPQFAAQRFVERHQLPVSVIPSLA 480 
WD40-rpts      _________)                                                                      

Query      481 GMISQEMDKLSKGAASAQSGYEDPFTGPGRYVPQGSSNSGGHGADPFTGSGRYVPQASNSSGFDTGFSGDPLTGDGGYRA 560 
WD40-rpts                                                                                      

Query      561 SAPENTGSHAVPLSSLPQNKKKPRGPLVPVPDFYIIGLAGKGEKAIAKLKELNEKQDAFQLNPDQINGLEELFVLPTSSN 640 
WD40-rpts                                                                                      

Query      641 YSSEVTQSAFEMSLQWPVEHLTPVLDFLRIALTHHSLNSYFCDRERGQELVGRLIAILVSDPADVALKVLVCRCIANAFS 720 
WD40-rpts                                                                                      

Query      721 HPVGRNLFASTELSTLAPLVVRQVLNEKTVLQMSAATALANWSLALLQQSEQCEQLGPKEDLLRAILNGIESVDSFGYLG 800 
WD40-rpts                                                                                      

Query      801 EDAIIRLLQALVTVMWGDASVIRLAKNRNIAQIAARLKDAVSNDSGKNIARDIVEMTYAV 860 
WD40-rpts                                                                  

9 WD40-repeats found in QUERY=C05C10.6b (Len=860):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    19-56       6.74  393.16  0.00031       25.0%     54.82
  WD 2:  Seg  6    63-103      5.66  348.66  0.00124       30.0%     48.54
  WD 3:  Seg  9   107-145      8.18  452.55  4.9e-05       20.0%     47.27
  WD 4:  Seg 13   146-194      6.70  391.45  0.00033       32.5%     51.57
  WD 5:  Seg 17   195-233      7.68  431.78  9.4e-05       27.5%     49.00
  WD 6:  Seg 21   237-274      5.28  332.85  0.00203       20.0%     54.17
  WD 7:  Seg 25   285-322      4.38  295.70  0.00643       10.0%     49.01
  WD 8:  Seg 29   335-366      3.47  257.90  0.02064       15.0%     37.53
  WD 9:  Seg 32   372-410      5.57  344.90  0.00140       17.5%     44.87

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   19-56     -YT--------ISHVIEAHKSDTKALAVT--QG-G-CLISGGRDETVKFWA
   WD 2   63-103    -TK--------THAFEQPKGITVNSIAYAELAD-GWRLFVGRRDGTIAVFG
   WD 3  107-145    -AE--------PYAIFNEHKQNVCCLHIN--EK-ATHMLSGSWDSNVIIWP
   WD 4  146-194    ITELNSSSFTFQTIVCPGHTLSVWALASF--PDLPNTYLSASADKTIRMWF
   WD 5  195-233    GDT--------TLSVFKGHTDVVRALVVL--SS-SH-FLSAGNDGHIIHWD
   WD 6  237-274    -AS--------ILRKFATQAHEFIYSMTL--SD-S-HILTTGEDGTLEFWA
   WD 7  285-322    -IV--------SEAVIQLPTTNTWDAKVL--LN-SD-IAVAGSDGRIYIMT
   WD 8  335-366    ----------------DAFDAEVVAKLTA--KT-ERMKQEEHETVTIKVDI
   WD 9  372-410    -QL--------NLKYKKGTDPGLCAQEFL--SE-NNLPIHYLEEITRFIKD

   WD40 Template    TGE--------CLRTLSGHTSGVTSVSFS--PD-GKRLVSGSEDGTIKVWD