Input parameters:

  Query = C05D2.10a (Len=484)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C05D2.10a, Len=484):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPQSENSKDAEKEKVMRSRRGTVDTEISGALTVLQSSLDVDDAPYRARLYQLFGHIEKEFDTLYAENCALRARIVQLTQT 80  
WD40-rpts                                                                 (____________________

Query       81 EGEAANVVAQEVFGVQESGKSSRKAIQMGQKLRTALRGPPVFRDGSKFRLSRLLEGHKDGVWHVAADSTRNICASASADQ 160 
WD40-rpts      __________WD 1______________________________)  (_________________WD 2___________

Query      161 TARIWSLESGACLATYTGHTGSVNCVAISNNCAVDSTEGSGPASGLLLATASGDESTHIWKVPSNNAPSDHSSEEEEEHH 240 
WD40-rpts      _____)   (_______________________WD 3_______________________)(_________________W

Query      241 RDPNNLLGVVEHNRFTSSSEKSDGHRIRVPVMRLTGHRAPVSCCEWLAGGQQMVTASWDRTANVWDVEKGEVVNILSGHE 320 
WD40-rpts      D 4________________)         (________________WD 5_______________)   (__________

Query      321 SELNHCSTHSNQKLVLTSSKDSTFRLWDFREAIQSVAVFQGHQDSVTSVSFNTDYRIVSSSDDATVKIWDLRNMRTPLAT 400 
WD40-rpts      _______WD 6________________)(__________________WD 7__________________)   (______

Query      401 IRLSSPANRVAISKSHPVIAIPMDNRHVRIYDLNGNRLPRMPNRRCHERMVTCCAWLDEHPANNLLTAGFDRMVAAWKVN 480 
WD40-rpts      ___________WD 8________________)                                                

Query      481 TTTS 484 
WD40-rpts          

8 WD40-repeats found in QUERY=C05D2.10a (Len=484):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    60-125      5.30  333.74  0.00198       12.5%     43.78
  WD 2:  Seg  5   128-166      9.48  506.28  9.3e-06       30.0%     52.18
  WD 3:  Seg  9   170-221      8.02  445.78  6.1e-05       37.5%     55.37
  WD 4:  Seg 13   222-260      6.99  403.29  0.00023       10.0%     36.25
  WD 5:  Seg 17   270-306      9.09  490.17  1.5e-05       30.0%     51.24
  WD 6:  Seg 21   310-348      9.98  526.97  4.9e-06       35.0%     55.35
  WD 7:  Seg 25   349-390      8.78  477.40  2.3e-05       47.5%     49.78
  WD 8:  Seg 28   394-432      7.68  431.70  9.5e-05       10.0%     48.74

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   60-125    FDT---LYAENCALRARIVQLTQTEGEAANVVAQEVFGVQESGKSSRKAIQM-------------GQKLRTALRGPPVFRDG
   WD 2  128-166    -FR---LSRLL------------------E--------GHKDGVWHVAADST-------------RNICASASADQTARIWS
   WD 3  170-221    -GA---CLATY------------------T--------GHTGSVNCVAISNNCAVDSTEGSGPASGLLLATASGDESTHIWK
   WD 4  222-260    -VP---SNNAP------------------S--------DHSSEEEEEHHRDP-------------NNLLGVVEHNRFTSSSE
   WD 5  270-306    ------PVMRL------------------T--------GHRAPVSCCEWLAG-------------GQQMVTASWDRTANVWD
   WD 6  310-348    -GE---VVNIL------------------S--------GHESELNHCSTHSN-------------QKLVLTSSKDSTFRLWD
   WD 7  349-390    FREAIQSVAVF------------------Q--------GHQDSVTSVSFNTD-------------Y-RIVSSSDDATVKIWD
   WD 8  394-432    -MR---TPLAT------------------I--------RLSSPANRVAISKS-------------HPVIAIPMDNRHVRIYD

   WD40 Template    TGE---CLRTL------------------S--------GHTSGVTSVSFSPD-------------GKRLVSGSEDGTIKVWD