Input parameters:

  Query = C05D2.10b (Len=486)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C05D2.10b, Len=486):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MPQSENSKDAEKEKVMRSRRGTVDTEISGALTVLQSSLDVDDAPYRARLYQLFGHIEKEFDTLYAENCALSVRARIVQLT 80  
WD40-rpts                                                                                      

Query       81 QTEGEAANVVAQEVFGVQESGKSSRKAIQMGQKLRTALRGPPVFRDGSKFRLSRLLEGHKDGVWHVAADSTRNICASASA 160 
WD40-rpts              (_________________WD 1________________)  (_________________WD 2_________

Query      161 DQTARIWSLESGACLATYTGHTGSVNCVAISNNCAVDSTEGSGPASGLLLATASGDESTHIWKVPSNNAPSDHSSEEEEE 240 
WD40-rpts      _______)   (_______________________WD 3_______________________)(________________

Query      241 HHRDPNNLLGVVEHNRFTSSSEKSDGHRIRVPVMRLTGHRAPVSCCEWLAGGQQMVTASWDRTANVWDVEKGEVVNILSG 320 
WD40-rpts      _WD 4________________)         (________________WD 5_______________)   (________

Query      321 HESELNHCSTHSNQKLVLTSSKDSTFRLWDFREAIQSVAVFQGHQDSVTSVSFNTDYRIVSSSDDATVKIWDLRNMRTPL 400 
WD40-rpts      _________WD 6________________)(__________________WD 7__________________)   (____

Query      401 ATIRLSSPANRVAISKSHPVIAIPMDNRHVRIYDLNGNRLPRMPNRRCHERMVTCCAWLDEHPANNLLTAGFDRMVAAWK 480 
WD40-rpts      _____________WD 8________________)                                              

Query      481 VNTTTS 486 
WD40-rpts            

8 WD40-repeats found in QUERY=C05D2.10b (Len=486):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    89-127      5.05  323.40  0.00273       12.5%     45.00
  WD 2:  Seg  5   130-168      9.47  505.75  9.5e-06       30.0%     53.30
  WD 3:  Seg  9   172-223      8.02  445.86  6.1e-05       37.5%     55.92
  WD 4:  Seg 13   224-262      7.00  403.66  0.00023       10.0%     35.82
  WD 5:  Seg 17   272-308      9.08  489.57  1.6e-05       30.0%     51.20
  WD 6:  Seg 21   312-350      9.97  526.68  5.0e-06       35.0%     55.13
  WD 7:  Seg 25   351-392      8.75  475.94  2.4e-05       47.5%     49.87
  WD 8:  Seg 28   396-434      7.67  431.63  9.5e-05       10.0%     48.55

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   89-127    -VV---AQEVFGVQESGKSSRKAIQM-------------GQKLRTALRGPPVFRDG
   WD 2  130-168    -FR---LSRLLEGHKDGVWHVAADST-------------RNICASASADQTARIWS
   WD 3  172-223    -GA---CLATYTGHTGSVNCVAISNNCAVDSTEGSGPASGLLLATASGDESTHIWK
   WD 4  224-262    -VP---SNNAPSDHSSEEEEEHHRDP-------------NNLLGVVEHNRFTSSSE
   WD 5  272-308    ------PVMRLTGHRAPVSCCEWLAG-------------GQQMVTASWDRTANVWD
   WD 6  312-350    -GE---VVNILSGHESELNHCSTHSN-------------QKLVLTSSKDSTFRLWD
   WD 7  351-392    FREAIQSVAVFQGHQDSVTSVSFNTD-------------Y-RIVSSSDDATVKIWD
   WD 8  396-434    -MR---TPLATIRLSSPANRVAISKS-------------HPVIAIPMDNRHVRIYD

   WD40 Template    TGE---CLRTLSGHTSGVTSVSFSPD-------------GKRLVSGSEDGTIKVWD