Input parameters:

  Query = C06E1.9 (Len=643)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C06E1.9, Len=643):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MRLVEIGALSADSDLVLWEASCETISHQISLKLARKEGGLMEIFNSVVASLPRKSDSFRFSAISSKTSWESAHRNLLENL 80  
WD40-rpts                (_____________________________________________________________________

Query       81 TKTVPVLLENGWKKSPDFQKNSLIDLFSLLEDEDATRIFKMTQESRSITEDDVEDYFSMFDKKFDRLLTYGAPQFENCVR 160 
WD40-rpts      _________________________________WD 1___________________________________________

Query      161 DSPMRQKYANLCVEVLVAVGASVKNAQKITDFLEKQSMKVSKIWMTRIPEIFEKITNFYDYPMMFDVAMALDGFPLRKVF 240 
WD40-rpts      ___________________________________________________________)                    

Query      241 LARRFALQSILEVFIEMAPNTKYKVRERVRQELEKASRFVGYASEMGHDNLLSSFSPKIVSSIEDSKHILEVETIERLRR 320 
WD40-rpts                                                                                      

Query      321 CGYLENLGAPLDELVRAQIASIREILPHFSAEFVHLALRHFSYDSEVTLASLLSRENLPLELLRLENVELRAGIGSGEWP 400 
WD40-rpts                                                                                      

Query      401 PLDFTASDEIEKLARADKRAKDEETRKNNETKSASNLFSLAPILSDRPPSPPVDQQAELRAHAEAYRTSVLTKLQKIRAD 480 
WD40-rpts                                                                                      

Query      481 AAGPSSPSEKIAVDAENLVPLATSKKYSALNSLKISEADKVAIRPTYNKYRYETPNDGGNGVYDDEYDDEFDGREFNIER 560 
WD40-rpts                                                                                      

Query      561 LNQELETSSEEDEAGSSAPPGLSQPPPYQGSRGGRGGRGARGGNRGGAPSADGYTGGHDRQMKEKHKSDIKQRGADRKKR 640 
WD40-rpts                                                                                      

Query      641 GVY 643 
WD40-rpts         

1 WD40-repeats found in QUERY=C06E1.9 (Len=643):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1    11-220      2.86  232.80  0.04444       37.5%      1.41

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   11-220    ADSDLVLWEASCETISHQISLKLARKEGGLMEIFNSVVASLPRKSDSFRFSAISSKTSWESAHRNLLENLTKTVPVLLENGWKKSPDFQKNSLIDLFSLLEDEDATRIFKMTQESRSITEDDVEDYFSMFDKKFDRLLTYGAPQFENCVRDSPMRQKYANLCVEVLVAVGASVKNAQKITDFLEKQSMKVSKIWMTRIPEIFEKITNFYD

   WD40 Template    TGECL-------RT---------------L----------------SGHTSGVTSV--------------------------SFSPDGKRLV-----SGSE-------------------D--------------------------------GT--------------------------------IKV------------------WD