Input parameters:

  Query = C08B6.7a (Len=750)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C08B6.7a, Len=750):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHQHMLGPSTSLGGTNNSALQSSVLSEGVLLSHSQPTREEIKKNFETREGVYRSVPSAEFSRPRPLPQYHMPPGIASAAA 80  
WD40-rpts      (______________WD 1_____________)                                               

Query       81 SQIAAAGSTVRVSFLNGAEKSVESPEAVAPTSSTYEHHKNEPNGARIDMVDEAQADKICFNVGKELYVFSYRGTQTETDL 160 
WD40-rpts                                                                                      

Query      161 SRPIDKRVYKGTSPTYHAFNQESAKNGSCQLLIGFTLGQLQIIDPLEKSSSSPFSRLYNEDRYIEKTSVTCIRWLPGDSN 240 
WD40-rpts           (_________________WD 2________________)          (__________________WD 3___

Query      241 IFLASYVSGNLYVYDQRISAASSNNNGSSQPPPWTIHKEGDKFAIHTWKGKVQRNPVTRWQIGEGSIHQFSFSGSDGKMM 320 
WD40-rpts      ______________)(______________WD 4______________)    (_________________WD 5_____

Query      321 ATVSHDGFLRIFNYHAQELLAVMKSYFGGLLTLSWSPDAKLIATGGEDDLLTVYSVAEKRVVCRGQAHKSWVSQVKFDPY 400 
WD40-rpts      ____________)   (_________________WD 6________________)   (_____________________

Query      401 LCTTEEDLENNGIAMTSTFDDVAKDFSIRSGPVPSTSADLNSGVMNATSTFSRCSLASFNTINGAPAGNSVRYRIGSVGH 480 
WD40-rpts      _WD 7_____________________)                   (__________________WD 8___________

Query      481 DTFLCLWDITEDMLNQGNIRRHRNSTIIAPMTTLEVQTNSLVGRLEDLQEVSPGGAGVNASSDSQSITNNHTTPRPEKQK 560 
WD40-rpts      _______)(_________________WD 9________________)   (_________________WD10________

Query      561 KKKFTKRLGFSKFTSGSSSATSNPVGGHKIGTLMNGASVNSESSKKQNPGLISQISCCNETRMLGSKFCPGIRDVPMIEP 640 
WD40-rpts      ________)    (_________________WD11________________)                            

Query      641 LMCKKVSHDRLTVLEFREDCVVTACQEGYICTWGRPGRYQPKRDCINSPGTASPESGQKPSGSTSAMTSSYGYGSDALNG 720 
WD40-rpts          (____________WD12____________)                                              

Query      721 VPPSRSSSTYSNTASTSVYHRPTYAWQNAN 750 
WD40-rpts                                    

12 WD40-repeats found in QUERY=C08B6.7a (Len=750):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     1-33       4.45  298.35  0.00592       10.0%      9.55
  WD 2:  Seg  8   166-204      5.81  354.54  0.00104       15.0%     40.56
  WD 3:  Seg 12   215-255      6.71  391.79  0.00033       17.5%     43.25
  WD 4:  Seg 15   256-289      3.94  277.34  0.01134       12.5%     16.11
  WD 5:  Seg 17   294-333      7.10  407.98  0.00020       22.5%     54.33
  WD 6:  Seg 21   337-375      9.53  508.40  8.7e-06       30.0%     55.52
  WD 7:  Seg 25   379-427      6.62  388.02  0.00037       20.0%     53.85
  WD 8:  Seg 30   447-488      5.31  334.03  0.00196       17.5%     38.57
  WD 9:  Seg 33   489-527      3.44  256.62  0.02147       10.0%     10.46
  WD10:  Seg 35   531-569      4.46  298.76  0.00585       10.0%      2.18
  WD11:  Seg 36   574-612      6.09  366.03  0.00073       10.0%      8.02
  WD12:  Seg 38   645-674      4.68  308.14  0.00437       17.5%     38.07

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    1-33     ----------MHQHMLGPSTSLGG-T----------NNS----ALQSSV-LSEGVLLSH
   WD 2  166-204    -KRVY---KGTSPTYHAFNQESAK-N----------GSC----QLLIGF-TLGQLQIID
   WD 3  215-255    SRLYN---EDRYIEKTSVTCIRWL-P----------GDS----NIFLASYVSGNLYVYD
   WD 4  256-289    ---------QRISAASSNNNGSSQ-P----------PPW----TIHKEG-DKFAIHTWK
   WD 5  294-333    -RNPV---TRWQIGEGSIHQFSFSGS----------DGK----MMATVS-HDGFLRIFN
   WD 6  337-375    -QELL---AVMKSYFGGLLTLSWS-P----------DAK----LIATGG-EDDLLTVYS
   WD 7  379-427    -KRVV---CRGQAHKSWVSQVKFD-PYLCTTEEDLENNG----IAMTST-FDDVAKDFS
   WD 8  447-488    ATSTF-----SRCSLASFNTINGA-P----------AGNSVRYRIGSVG-HDTFLCLWD
   WD 9  489-527    ITEDMLNQGNIRRHRNSTIIAPMT-T------------------LEVQT-NSLVGRLED
   WD10  531-569    -VSPG---GAGVNASSDSQSITNN-H----------TTP----RPEKQK-KKKFTKRLG
   WD11  574-612    -TSGS---SSATSNPVGGHKIGTL-M----------NGA----SVNSES-SKKQNPGLI
   WD12  645-674    -----------KVSHDRLTVLEFR-E----------DC------VVTAC-QEGYICTWG

   WD40 Template    TGECL---RTLSGHTSGVTSVSFS-P----------DGK----RLVSGS-EDGTIKVWD