Input parameters:

  Query = C08B6.7b (Len=768)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C08B6.7b, Len=768):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MHQHMLGPSTSLGGTNNSALQSSVLSEGVLLSHSQPTREEIKKNFETREGVYRSVPSAEFSRPRPLPQYHMPPGIASAAA 80  
WD40-rpts                                                                                      

Query       81 SQIAAAGSTVRVSFLNGAEKSVESPEAVAPTSSTYEHHKNEPNGARIDMVDEAQADKICFNVGKELYVFSYRGTQTETDL 160 
WD40-rpts                                                                                      

Query      161 SRPIDKRVYKGTSPTYHAFNQESAKNGSCQLLIGFTLGQLQIIDPLEKSSSSPFSRLYNEDRYIEKTSVTCIRWLPGDSN 240 
WD40-rpts               (_______________WD 1______________)           (_________________WD 2___

Query      241 IFLASYVSGNLYVYDQRISAASSNNNGSSQPPPWTIHKEGDKFAIHTWKGKVQRNPVTRWQIGEGSIHQFSFSGSDGKMM 320 
WD40-rpts      ______________)(______________WD 3______________)    (_________________WD 4_____

Query      321 ATVSHDGFLRIFNYHAQELLAVMKSYFGGLLTLSWSPDAKLIATGGEDDLLTVYSVAEKRVVCRGQAHKSWVSQVKFDPY 400 
WD40-rpts      ____________)   (_________________WD 5________________)   (_____________________

Query      401 LCTTEEDLENNGIAMTSTFDDVAKDFSIRSGPVPSTSADLNSGVMNATSTFSRCSLASFNTINGAPAGNSVRYRIGSVGH 480 
WD40-rpts      _WD 6_____________________)                   (__________________WD 7___________

Query      481 DTFLCLWDITEDMLNQGNIRRHRNSTIIAPMTTLEVQTNSLVGRLEDLQEVSPGGAGVNASSDSQSITNNHTTPRPEKQK 560 
WD40-rpts      _______)(_________________WD 8________________)   (_________________WD 9________

Query      561 KKKFTKRLGFSKFTSGSSSATSNPVGGHKIGTLMNGASVNSESSKKQNPGLISQISCCNETRMLGSKFCPGIRDVPMIEP 640 
WD40-rpts      ________)    (_________________WD10________________)                         (__

Query      641 LMCKKVSHDRLTVLEFREDCVVTACQEGYICTWGRPGRYQPKRDCINSPGTASPESGQKPSGSTSAMTSSYGYGSDALNG 720 
WD40-rpts      ______________WD11_______________)                                     (________

Query      721 VPPSRSSSTYSNSEQQLRSPNITSPSYRVSAASTSVYHRPTYAWQNAN 768 
WD40-rpts      _________WD12________________)                  

12 WD40-repeats found in QUERY=C08B6.7b (Len=768):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  9   170-204      5.90  358.37  0.00092       17.5%     34.67
  WD 2:  Seg 13   216-255      5.29  333.01  0.00202       17.5%     43.77
  WD 3:  Seg 16   256-289      3.81  272.18  0.01330       12.5%     13.97
  WD 4:  Seg 18   294-333      7.04  405.36  0.00021       22.5%     54.61
  WD 5:  Seg 22   337-375      9.45  504.86  9.8e-06       30.0%     55.49
  WD 6:  Seg 26   379-427      6.58  386.50  0.00038       20.0%     51.02
  WD 7:  Seg 31   447-488      5.17  328.30  0.00234       17.5%     40.21
  WD 8:  Seg 34   489-527      3.63  264.57  0.01681       10.0%     12.09
  WD 9:  Seg 36   531-569      5.88  357.58  0.00094       10.0%      0.72
  WD10:  Seg 37   574-612      6.11  367.15  0.00070       10.0%      6.49
  WD11:  Seg 38   638-674      4.64  306.49  0.00460       22.5%     43.56
  WD12:  Seg 42   712-750      4.99  320.78  0.00296       17.5%     14.05

Multiple sequence alignment of 12 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  170-204    KG--------TSPTYHAFNQESAK-N----------GSC----QLLIGF-TLGQLQIID
   WD 2  216-255    -RLYN---EDRYIEKTSVTCIRWL-P----------GDS----NIFLASYVSGNLYVYD
   WD 3  256-289    ---------QRISAASSNNNGSSQ-P----------PPW----TIHKEG-DKFAIHTWK
   WD 4  294-333    -RNPV---TRWQIGEGSIHQFSFSGS----------DGK----MMATVS-HDGFLRIFN
   WD 5  337-375    -QELL---AVMKSYFGGLLTLSWS-P----------DAK----LIATGG-EDDLLTVYS
   WD 6  379-427    -KRVV---CRGQAHKSWVSQVKFD-PYLCTTEEDLENNG----IAMTST-FDDVAKDFS
   WD 7  447-488    ATSTF-----SRCSLASFNTINGA-P----------AGNSVRYRIGSVG-HDTFLCLWD
   WD 8  489-527    ITEDMLNQGNIRRHRNSTIIAPMT-T------------------LEVQT-NSLVGRLED
   WD 9  531-569    -VSPG---GAGVNASSDSQSITNN-H----------TTP----RPEKQK-KKKFTKRLG
   WD10  574-612    -TSGS---SSATSNPVGGHKIGTL-M----------NGA----SVNSES-SKKQNPGLI
   WD11  638-674    -IEPL---MCKKVSHDRLTVLEFR-E----------DC------VVTAC-QEGYICTWG
   WD12  712-750    -GYGS---DALNGVPPSRSSSTYS-N----------SEQ----QLRSPN-ITSPSYRVS

   WD40 Template    TGECL---RTLSGHTSGVTSVSFS-P----------DGK----RLVSGS-EDGTIKVWD