Input parameters:
Query = C08H9.10 (Len=457)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C08H9.10, Len=457):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MNPADLNSTSVPLLRNQNITQKNNRQWKNFIKHCYILITILVLSAPIAFSLSKLIMVARHKSPTVSNLIRVFIPSSKKLK 80
WD40-rpts
Query 81 TTTEKNLPTTKQLFKYSTETIFPPAALCGKRIVGYFAEFENTALTRKQLQMLTHIIYLFAIPKNGNMTFGGERSRRKFEE 160
WD40-rpts (__________________
Query 161 MKNEARKANSTLKVMISIGGQSNSRSFSRLVSNETSRNVFVNSIVSFVQKYDIDGIEIFWTWPKYEDANNYLIFIQELRY 240
WD40-rpts ___________________WD 1_____________________________________)
Query 241 AFIELQKKLNRKEDYVISIIVNCYDNQLSNLMGFSKFVDFFNIYSIHYQSRQVGPSSPLYGGGSRNIDETMKYYICRTGQ 320
WD40-rpts
Query 321 PSKFNMMVLFHGTFWKGAELPLRNDSDDIFKDQNSAKGGFAVRWRELLQQKWDMSNIKFHNLTKTSYMWIPGSSLFLTLE 400
WD40-rpts
Query 401 DEQSLRVKNRYVADHNIGGITMWTIDQDDGDHTLLKVVSSAELCTGDEKNTIKFKCE 457
WD40-rpts
1 WD40-repeats found in QUERY=C08H9.10 (Len=457):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 5 142-221 3.09 242.31 0.03327 30.0% -0.29
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 142-221 PKNGNMTFGGERSRRKFEEMKNEARKANSTLKVMISIGGQSNSRSFSRLVSNETSRNVFVNSIVSFVQKYDIDGIEIFWT
WD40 Template TGECLRTLSGHTS----------------------GVTSVSFSPDGKRLVSG------------------SEDGTIKVWD