Input parameters:

  Query = C08H9.11 (Len=459)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C08H9.11, Len=459):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MNPVPSNSTNAPLLENQQITRRISCLIQWKHLIKPCLILIAILVFSAPVAYSLSELIMVARHKSETVSNLIKIFIPSSKK 80  
WD40-rpts                                                                                      

Query       81 LSTTTKTNSPPKHLIQESHQTISPPAAFCGKRIVGYFAEFENAGLSRKQLHMLTHIIYLFARPTNGVITLDGEQTRRKFE 160 
WD40-rpts                                                                    (_________________

Query      161 EMKSKAREASSTLKVMISVGGHDYYKEYSRLVSNETSRNVFVKSIVSFFKKNDIDGIEIFWTRPKYEDIKSYSSFIQELR 240 
WD40-rpts      ____________________WD 1_____________________________________)                  

Query      241 SAFTELQKRWNRKNEYIISLIVPKEKHWSFDLKDFSKFVDFFNIYSTQFREKQVGPDSPLYGGEGRNIDETMKYYICKTG 320 
WD40-rpts                                                                                      

Query      321 QPSKFNIMVSFHGTFWEGAELPLRDYSDDIWKEKNVARGPFAVRWRHLRQRNWNLTDIKFHNLTKTSYIWIPGPPTWFLT 400 
WD40-rpts                                                                                      

Query      401 LEDEKSLREKNRYVADHNIGGITMWTIDQDDDDHTLLKVVSSAELCTGDEKNTIKYTCE 459 
WD40-rpts                                                                 

1 WD40-repeats found in QUERY=C08H9.11 (Len=459):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  4   143-222      3.28  250.29  0.02606       27.5%      0.16

Multiple sequence alignment of 1 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1  143-222    PTNGVITLDGEQTRRKFEEMKSKAREASSTLKVMISVGGHDYYKEYSRLVSNETSRNVFVKSIVSFFKKNDIDGIEIFWT

   WD40 Template    TGECLRTLSGHTS----------------------GVTSVSFSPDGKRLVSG------------------SEDGTIKVWD