WDRR: WD40 Repeat Recognition
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Pre-calculated Results - Accession: C09B9.2    [Caenorhabditis elegans]

[Download result as txt]    [Query sequence in FASTA]
Input parameters:
  Query = C09B9.2 (Len=328)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C09B9.2, Len=328):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MGARKQKKKANSLGNSSKRSFTSVLPHEVSSFHEEDKKTSSAPRTIYKVAEKKKSGDKKENTSTAASSIIGCLQIFIIVY 80  
WD40-rpts                                                                                      

Query       81 LLTAMTYQFVWGEVRDLWAYLAEIMMFELIAGFVLIRLSNNHWIGVACLFLSYHFVLLFLMFSFFLQSSFSSKSRFVEQI 160 
WD40-rpts                                             (________________________________________

Query      161 FGMSAVSSMSTCAHFIIVVNAVQMIAKSKKRNDYGEKVIVEDVDKRRKDLYLMISDLISEICFDDKDSKLHLTIKDETGR 240 
WD40-rpts      ______________WD 1_____________________________________________________)        

Query      241 PKTMSGAGIEAGVSRVLEMSMDGDKVSLSTSNTTQACIHVPNSSKKHKKRGSRSRSPHHEKSNLSKYNRCQKQDEMLSPR 320 
WD40-rpts                                                                                      

Query      321 KILADENN 328 
WD40-rpts              



1 WD40-repeats found in QUERY=C09B9.2 (Len=328):
(Red - Z-score>4.0)
  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2   120-232      2.82  231.18  0.04668       15.0%     28.04
Multiple sequence alignment of 1 WD40-repeats:
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
   WD 1  120-232    NNHWIGVACLFLSYHFVLLFLMFSFFLQSSFSSKSRFVEQIFGMSAVSSMSTCAHFIIVVNAVQMIAKSKKRNDYGEKVIVEDVDKRRKDLYLMISDLISEICFDDKDSKLHL

   WD40 Template    TGECLRTL--------------------SGHTSG---------V------------------------TSVSFSPDGKRLVSG--------------------SEDGTIKVWD


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Last modified: 09 Jan 2019