Input parameters:
Query = C09B9.2 (Len=328)
Tmplt = WD40-str (Len=40)
Method = bdp Gap-open = 50 Gap-extend = 3
Database = /home/pub/blastdb/nr90 E-value = 0.001 Iteration = 3
Query sequence (C09B9.2, Len=328):
(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query 1 MGARKQKKKANSLGNSSKRSFTSVLPHEVSSFHEEDKKTSSAPRTIYKVAEKKKSGDKKENTSTAASSIIGCLQIFIIVY 80
WD40-rpts
Query 81 LLTAMTYQFVWGEVRDLWAYLAEIMMFELIAGFVLIRLSNNHWIGVACLFLSYHFVLLFLMFSFFLQSSFSSKSRFVEQI 160
WD40-rpts (________________________________________
Query 161 FGMSAVSSMSTCAHFIIVVNAVQMIAKSKKRNDYGEKVIVEDVDKRRKDLYLMISDLISEICFDDKDSKLHLTIKDETGR 240
WD40-rpts ______________WD 1_____________________________________________________)
Query 241 PKTMSGAGIEAGVSRVLEMSMDGDKVSLSTSNTTQACIHVPNSSKKHKKRGSRSRSPHHEKSNLSKYNRCQKQDEMLSPR 320
WD40-rpts
Query 321 KILADENN 328
WD40-rpts
1 WD40-repeats found in QUERY=C09B9.2 (Len=328):(Red - Z-score>4.0)
Rpts Segment Boundary Z-score Score P-value Identities SS-score
WD 1: Seg 2 120-232 2.82 231.18 0.04668 15.0% 28.04
Multiple sequence alignment of 1 WD40-repeats:(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)
WD 1 120-232 NNHWIGVACLFLSYHFVLLFLMFSFFLQSSFSSKSRFVEQIFGMSAVSSMSTCAHFIIVVNAVQMIAKSKKRNDYGEKVIVEDVDKRRKDLYLMISDLISEICFDDKDSKLHL
WD40 Template TGECLRTL--------------------SGHTSG---------V------------------------TSVSFSPDGKRLVSG--------------------SEDGTIKVWD