Input parameters:

  Query = C09G4.5 (Len=459)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C09G4.5, Len=459):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEHTKKFKSLNLHGFDRSTEDYGKRPFVLTAKLLEDQKKAIYGCAFNQYAGIDEEQAVATVGGSFLHMYSVPIDINNIEL 80  
WD40-rpts                  (__________________________WD 1__________________________)          

Query       81 QWSCNFPTDKSSKVEREESLFTVTWCYDTYEAENDRNPFKVVTGGTLGHIYVIDYVSRKLSNRLRSVGWEINDIRTCPAN 160 
WD40-rpts                    (_________________WD 2_________________)   (_________________WD 3_

Query      161 SNLIVCASSDQSIRIHHIRNEACLIVIGGLECHAGTILSVDWSTDGDFILSCGFDHQLMEWDLSVKQVKEHLERACKALH 240 
WD40-rpts      ________________)(____________________WD 4___________________)          (_______

Query      241 QDKINVLTQSQDIPYVSKGTMRKSAVSRNIPDKEEDQLLELHRELIPRPSCLLPIYTPSSVSTDMHSDYVDCIRFLIGTN 320 
WD40-rpts      _________WD 5_______________)   (_________________WD 6________________)        (

Query      321 YALSKGCGNEKAIHFWRFGPPKGEVENRIHGNVLRPKSCTTKFRTMNVPSGSAWFIKFAVDPRRRWLVCGGAGGSVMFFD 400 
WD40-rpts      _________________WD 7________________)   (_________________WD 8________________)

Query      401 LRNNEETNPTHTCSVGSRTVRQASFSTCGRFLVLVTDEGFVCRFDRVSASVDAKDLAKF 459 
WD40-rpts            (_________________WD 9________________)              

9 WD40-repeats found in QUERY=C09G4.5 (Len=459):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2    13-70       5.21  329.87  0.00223       12.5%     54.45
  WD 2:  Seg  8    95-134      7.39  419.82  0.00014       17.5%     33.87
  WD 3:  Seg 11   138-177      7.36  418.77  0.00014       15.0%     55.58
  WD 4:  Seg 15   178-222      8.64  471.48  2.7e-05       27.5%     48.89
  WD 5:  Seg 20   233-269      7.26  414.76  0.00016       12.5%     39.52
  WD 6:  Seg 23   273-311      5.60  345.96  0.00135       20.0%     13.90
  WD 7:  Seg 26   320-358      7.38  419.50  0.00014       10.0%     47.44
  WD 8:  Seg 30   362-400      8.26  455.69  4.5e-05       15.0%     52.65
  WD 9:  Seg 34   407-445      8.27  456.25  4.4e-05       27.5%     53.28

Multiple sequence alignment of 9 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   13-70     HGFDRSTEDYGKRPFVL-----TAKLLEDQKKAIYGCAFNQYAGIDEEQAVATVGGSFLHMYS
   WD 2   95-134    ER--------------E-----ESLFTVTWCYDTYEAENDR----NPFKVVTGGTLGHIYVID
   WD 3  138-177    -R--------------K-----LSNRLRSVGWEINDIRTCP---ANSNLIVCASSDQSIRIHH
   WD 4  178-222    IR--------------NEACLIVIGGLECHAGTILSVDWST----DGDFILSCGFDHQLMEWD
   WD 5  233-269    ER--------------A-----C---KALHQDKINVLTQSQ----DIPYVSKGTMRKSAVSRN
   WD 6  273-311    -K--------------E-----EDQLLELHRELIPRPSCLL----PIYTPSSVSTDMHSDYVD
   WD 7  320-358    -N--------------Y-----ALSKGCGNEKAIHFWRFGP----PKGEVENRIHGNVLRPKS
   WD 8  362-400    -K--------------F-----RTMNVPSGSAWFIKFAVDP----RRRWLVCGGAGGSVMFFD
   WD 9  407-445    -T--------------N-----PTHTCSVGSRTVRQASFST----CGRFLVLVTDEGFVCRFD

   WD40 Template    TG--------------E-----CLRTLSGHTSGVTSVSFSP----DGKRLVSGSEDGTIKVWD