Input parameters:

  Query = C09G9.2a (Len=371)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C09G9.2a, Len=371):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MAVVTITTDTEDSEIPQRTEVGSSTPLVDEIMQHADVKLSKILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAT 80  
WD40-rpts             (___________________________WD 1___________________________)   (_________

Query       81 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDDLALMSRIPSIHSGSASRKICRHGNSILSASSNGSLVAVDVETGM 160 
WD40-rpts      _________WD 2_________________)(___________________WD 3___________________)  (__

Query      161 PRTIFTGQAGIRSVCTTFGTNVVMAGDANGQITMWDLRENNEHSNTLDPIKTLIPSKKALDAVTALCSHPAQSNLVCCGT 240 
WD40-rpts      _______________WD 4________________)(________________________WD 5_______________

Query      241 DDGIVGLIDARNVRGANITSTYLVAKKAISQVMFHPKCGDNLLVSSNDGSLIRIDASGAPIAVGPRSTKDTIWLEGDLVN 320 
WD40-rpts      ________)      (_________________WD 6_________________)                   (_____

Query      321 SLRLDPIRNESVHSISSFDIRSDTVVTASSIGLISLYQQLPFFPNSNFGRF 371 
WD40-rpts      ______________WD 7___________________)             

7 WD40-repeats found in QUERY=C09G9.2a (Len=371):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  2     8-67       4.10  283.89  0.00926       12.5%     42.41
  WD 2:  Seg  5    71-111      6.15  368.62  0.00067       15.0%     41.92
  WD 3:  Seg  9   112-155      8.29  457.14  4.3e-05       22.5%     55.68
  WD 4:  Seg 13   158-196      7.98  444.46  6.4e-05       25.0%     55.01
  WD 5:  Seg 17   197-249      6.50  383.01  0.00043       22.5%     51.52
  WD 6:  Seg 21   256-295      7.55  426.64  0.00011       25.0%     55.71
  WD 7:  Seg 27   315-358      5.76  352.68  0.00110       25.0%     32.83

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    8-67     TDTEDSEIPQRTEVGSSTP------------LVDEIMQHADVKLSKI----L--FTG-ETSSQIISLGKGRGRCISLWE
   WD 2   71-111    -G----------------I------------DPFKVLATKNSE-IDP----NDACTM-TDNRVCIGY---ADGSLAVFS
   WD 3  112-155    TD----------------K--------DDLALMSRIPSIHSGS-ASR----K--ICR-HGNSILSAS---SNGSLVAVD
   WD 4  158-196    -T----------------G------------MPRTIFTGQAGI-RSV----C--TTF-GTNVVMAGD---ANGQITMWD
   WD 5  197-249    LR----------------ENNEHSNTLDPIKTLIPSKKALDAV-TAL----C--SHPAQSNLVCCGT---DDGIVGLID
   WD 6  256-295    -A----------------N------------ITSTYLVAKKAI-SQV----M--FHPKCGDNLLVSS---NDGSLIRID
   WD 7  315-358    EG----------------D------------LVNSLRLDPIRN-ESVHSISS--FDI-RSDTVVTAS---SIGLISLYQ

   WD40 Template    TG----------------E------------CLRTLSGHTSGV-TSV----S--FSP-DGKRLVSGS---EDGTIKVWD