Input parameters:

  Query = C09G9.2b (Len=279)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C09G9.2b, Len=279):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MTDNRVCIGYADGSLAVFSTDKDDLALMSRIPSIHSGSASRKICRHGNSILSASSNGSLVAVDVETGMPRTIFTGQAGIR 80  
WD40-rpts                         (___________________WD 1___________________)   (_____________

Query       81 SVCTTFGTNVVMAGDANGQITMWDLRENNEHSNTLDPIKTLIPSKKALDAVTALCSHPAQSNLVCCGTDDGIVGLIDARN 160 
WD40-rpts      ___WD 2________________)(________________________WD 3_______________________)   

Query      161 VRGANITSTYLVAKKAISQVMFHPKCGDNLLVSSNDGSLIRIDASGAPIAVGPRSTKDTIWLEGDLVNSLRLDPIRNESV 240 
WD40-rpts         (_________________WD 4_________________)                   (_________________

Query      241 HSISSFDIRSDTVVTASSIGLISLYQQLPFFPNSNFGRF 279 
WD40-rpts      __WD 5___________________)             

5 WD40-repeats found in QUERY=C09G9.2b (Len=279):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  3    20-63       8.27  456.21  4.4e-05       22.5%     54.87
  WD 2:  Seg  7    67-104      7.53  425.52  0.00011       25.0%     56.47
  WD 3:  Seg 11   105-157      6.48  382.26  0.00044       22.5%     51.41
  WD 4:  Seg 15   164-203      7.56  426.98  0.00011       25.0%     55.45
  WD 5:  Seg 21   223-266      5.79  353.88  0.00106       25.0%     33.00

Multiple sequence alignment of 5 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1   20-63     TDK--------DDLALMSRIPSIHSGSASR----KICR-HGNSILSASSNGSLVAVD
   WD 2   67-104    -GM------------PRTIFTGQ-AGIRSV----CTTF-GTNVVMAGDANGQITMWD
   WD 3  105-157    LRENNEHSNTLDPIKTLIPSKKALDAVTAL----CSHPAQSNLVCCGTDDGIVGLID
   WD 4  164-203    -AN------------ITSTYLVAKKAISQV----MFHPKCGDNLLVSSNDGSLIRID
   WD 5  223-266    EGD------------LVNSLRLDPIRNESVHSISSFDI-RSDTVVTASSIGLISLYQ

   WD40 Template    TGE------------CLRTLSGHTSGVTSV----SFSP-DGKRLVSGSEDGTIKVWD