Input parameters:

  Query = C10B5.1 (Len=311)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C10B5.1, Len=311):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MIKPPSPIFTFFGIEGGATCSCLNNGQLLVGSQNGMVQAFGLESKIMEHIVYVDEEERRIQSIEISGNDTFVYIRSYAVL 80  
WD40-rpts         (________________WD 1________________)(____________________WD 2______________

Query       81 QLRKPEMSKSTWKVIRTIEVDHVGFCNFLILQSQLLFASTDDKRYAKLCWTEIKDESIPTKSNRILDEADVNPMCMLVGE 160 
WD40-rpts      _____)(____________________WD 3___________________)   (____________________WD 4_

Query      161 EKENEVLIGMEDGRLAICYGDNGMFECQAKQKLGRDPIFCIASSSKWVAAGCARAPIYLLNRYDLSKQEIPYPPDAAGCS 240 
WD40-rpts      __________________)(__________________WD 5__________________)    (______________

Query      241 AISFSPNSKQIIAGFWDGSIRVFSRHRLNVLLALTNAHSSTISSIIWLPPEQGEIVIATSSDSTVSLWKLK 311 
WD40-rpts      ___WD 6________________)    (__________________WD 7_________________)  

7 WD40-repeats found in QUERY=C10B5.1 (Len=311):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg  1     4-41       7.21  412.62  0.00017       20.0%     54.78
  WD 2:  Seg  5    42-86       3.76  269.88  0.01427        7.5%     37.93
  WD 3:  Seg  9    87-131      6.88  398.68  0.00026        5.0%     38.37
  WD 4:  Seg 13   135-179      6.77  394.39  0.00030       17.5%     52.67
  WD 5:  Seg 17   180-221      6.07  365.30  0.00074       12.5%     54.78
  WD 6:  Seg 21   226-264      9.13  492.00  1.5e-05       27.5%     56.22
  WD 7:  Seg 25   269-309      8.00  445.09  6.2e-05       25.0%     52.84

Multiple sequence alignment of 7 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1    4-41     PP----S-----PIFTFFGIE------GGATCSCLN----NGQL-LVGSQNGMVQAFG
   WD 2   42-86     LESKIME-----HIVYVDEEE------RRIQSIEISG--NDTFVYIRSYAVLQLRKPE
   WD 3   87-131    MS----KSTWKVIRTIEVDHV------GFCNFLILQS--QLLFA-STDDKRYAKLCWT
   WD 4  135-179    -D----E-----SIPTKSNRILDEADVNPMCMLVGEE--KENEV-LIGMEDGRLAICY
   WD 5  180-221    GDNGMFE-----CQAKQKLGR------DPIFCIASSS--KW--V-AAGCARAPIYLLN
   WD 6  226-264    -S----K-----QEIPYPPDA------AGCSAISFSP--NSKQI-IAGFWDGSIRVFS
   WD 7  269-309    -N----V-----LLALTNAHS------STISSIIWLPPEQGEIV-IATSSDSTVSLWK

   WD40 Template    TG----E-----CLRTLSGHT------SGVTSVSFSP--DGKRL-VSGSEDGTIKVWD