Input parameters:

  Query = C10C5.6a (Len=1776)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C10C5.6a, Len=1776):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEDRSITPFSSFAERLTVNLWHAQRNVERVTLYLQEPRHVEDIAGSMEDEWDCIEECVNRRKGSDRLRTASVAIIMCLH 80  
WD40-rpts                                                                                      

Query       81 LGVDPPEAPSRKDAPSRLLSWVDPYKCGAHKAAIEIGLSTQRAYEKWQPKSKTRYKICTDPPIDDVRKVATNLRRISGND 160 
WD40-rpts                                                                                      

Query      161 RVLFHYNGHGVPKPTDNGEIWVFNKSFTQYIPLSIFDLQGWLDYPTIYIWETHSAETILHNYRRFGEDQKISWQSRFDRW 240 
WD40-rpts                                                                                      

Query      241 QEEQRNLPPISSKMTDADQAEALGFPEKYPRYNDCIHLAACSAGQWLPMSNPHLPADLFTSCLTTPIRTSLAFHLSHSEH 320 
WD40-rpts                                                                                      

Query      321 RDEYPENILDMIPGNLAERRTVLGELNWIFTAITDTIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLPVS 400 
WD40-rpts                                                                                      

Query      401 QPPLKDTSMHDLWRCWDQTMDMVLDYCRELIYVKECERALFCGRDVINRSNVFPFLVLIDFEHVLTYNETHQYNTFFTEQ 480 
WD40-rpts                                                                                      

Query      481 LQAFELWLDYGVDEGTPPLQLPMVLQVLLSQAHRVRALRLLARFLDFGRWAIGYSLAVGIFPYVLKLLQSNISDLKISLA 560 
WD40-rpts                                                                                      

Query      561 FIWAKILAVDPSCQMELFNECIDESATQQQSPAQSQQPSVALKPSSMFANHPPPAQLTMDKRALQINTQTGGRFQTNQNQ 640 
WD40-rpts                                                                                      

Query      641 ALDMQLQYAQQQAHQRQMDPSGGQHSPNAQPRQPQPQQPQQLQQQPSQQQQQQSRQPQGIMKPTNAQPQEKKTMLRFQYF 720 
WD40-rpts                                                                                      

Query      721 LQLLGDPEIKPKQKTVAAFVLAQLTSNNFKLAQKELTNKGYMGICTELMVDDTARSVKLLKLWILIGLGRLWSDYDVARW 800 
WD40-rpts                                                                                      

Query      801 QGIRLMAHDKMILELSDESAEVRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVF 880 
WD40-rpts                                                                                      

Query      881 DFEKRFVKFLLELSNQIKFKLPRKRNSSENLSEQGLDIAAEMPSNHRRPRAPPVNEFMQPSVIRKKMSTSVFSTAVEETV 960 
WD40-rpts                                                                                      

Query      961 HEDGIGNVYHIAHEAGNRVEQESEDIEYRERAKVQIKHLEAKTFNEAVAKTWLSLLILSLDPIERVARMAQKIVHRVEAG 1040
WD40-rpts                                                                                      

Query     1041 MPEMQANIDNTMAHLSRKMIARKNSKATVEMPRKPVGPSEEVSTLSERIKRNLEVEKESGVSADGIDFTKLNMQKAKEQR 1120
WD40-rpts                                                                                      

Query     1121 KGGKGGQIKKLQDESKVKFQVGSPGDVNQQHKNALSPGSSFTDETQSSELFSKDDSSDDDENKSANDEKDRATTASGKTV 1200
WD40-rpts                                                                                      

Query     1201 KGAFRKSDIMDAALMEFTPRRTKAVPGDFAVKEESKTLRTVIENPIVSTQFVAWCSKVFVEPILHVITLDEEKSEDWEHE 1280
WD40-rpts                                                                                      

Query     1281 DEDEFMPEQFREKIKDIQKQDRKMHEEKRARDKKEGKKEKSQEDVVVTTTTISDWAIHAMEGMLQSADIEGRDFQSCKYD 1360
WD40-rpts                                                                                      

Query     1361 ECLWRVKLTHPARSLTTSKLRRCMYASDGRLMTIIRQDTDTRSFRRFDLTASNPFCPSYVSQLILINDMSREMVIACSTN 1440
WD40-rpts          (______________WD 1_____________)   (_____________________WD 2______________

Query     1441 GVVRIWDPYFLGWCDDYEKPPELVSASFPLESQMKISDETNRCLFDWNQQNGKLLCTGTRSVRIWDAHCEKVCHDVMYSP 1520
WD40-rpts      ______)   (________________WD 3________________)                                

Query     1521 GSKQQTGPGAKLNTNTLPTAMSGNLDEEGNMVAVGYADGRVDYFDMRMANPKAARCNLAPVNMSKQFNDRPPGIMHLRVN 1600
WD40-rpts            (_________________WD 4________________)               (__________________W

Query     1601 RQGFGTELFAGSQDGSIYKLQLRMFKEATPSIVTPWEYGAHSHMFVHEDSRILASAGGGELAIYDVAQNKLMARILPPGE 1680
WD40-rpts      D 5_________________)      (________________WD 6________________)  (____________

Query     1681 PNSMRRDKNSSTFGLFSSQRKLSQVQMSGRMSSMSSATVGEDRQPKVISLTMHQMRLLTVAGYDDNTVCVYGSPKPGLTG 1760
WD40-rpts      _____WD 7________________)  (___________________WD 8___________________)        

Query     1761 HYENTQGASSPPSQSL 1776
WD40-rpts                      

8 WD40-repeats found in QUERY=C10C5.6a (Len=1776):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 10  1365-1397     3.44  256.62  0.02147        7.5%     32.94
  WD 2:  Seg 13  1401-1447     4.99  320.66  0.00297       17.5%     27.98
  WD 3:  Seg 17  1451-1488     4.36  294.75  0.00662       15.0%     20.47
  WD 4:  Seg 22  1527-1565     4.97  319.96  0.00303       17.5%     24.12
  WD 5:  Seg 24  1581-1621     5.30  333.58  0.00199       20.0%     42.39
  WD 6:  Seg 27  1628-1665     4.80  312.74  0.00379       12.5%     46.49
  WD 7:  Seg 31  1668-1706     5.11  325.65  0.00254        7.5%     45.15
  WD 8:  Seg 35  1709-1752     5.97  361.37  0.00084       22.5%     42.08

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1365-1397   RVK-------LTHP-----ARSLTT--------SK--LRRCMYASDGRLMTIIRQ
   WD 2 1401-1447   -TRSFRRFDLTASN-----PFCPSYVSQLILINDM--SREMVIACSTNGVVRIWD
   WD 3 1451-1488   -LGWCDDYEKPPEL-----V-SASF--------PL--ESQMKISDETNRCLFDWN
   WD 4 1527-1565   -GPGAKLNTNTLPT-----AMSGNL--------DE--EGNMVAVGYADGRVDYFD
   WD 5 1581-1621   -VNMSKQFNDRPPG-----IMHLRV--------NRQGFGTELFAGSQDGSIYKLQ
   WD 6 1628-1665   -ATPSIVTPWEYGA-----HSHMFV--------HE--DSRILASAG-GGELAIYD
   WD 7 1668-1706   -QNKLMARILPPGE-----PNSMRR--------DK--NSSTFGLFSSQRKLSQVQ
   WD 8 1709-1752   -GRMSSMSSATVGEDRQPKVISLTM--------HQ--MRLLTVAGYDDNTVCVYG

   WD40 Template    TGECLRTLSGHTSG-----VTSVSF--------SP--DGKRLVSGSEDGTIKVWD