Input parameters:

  Query = C10C5.6b (Len=1782)
  Tmplt = WD40-str (Len=40)
  Method = bdp  Gap-open = 50  Gap-extend = 3
  Database = /home/pub/blastdb/nr90  E-value = 0.001  Iteration = 3

Query sequence (C10C5.6b, Len=1782):

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

                       10        20        30        40        50        60        70        80
               ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Query        1 MEEDRSITPFSSFAERLTVNLWHAQRNVERVTLYLQEPRHVEDIAGSMEDEWDCIEECVNRRKGSDRLRTASVAIIMCLH 80  
WD40-rpts                                                                                      

Query       81 LGVDPPEAPSRKDAPSRLLSWVDPYKCGAHKAAIEIGLSTQRAYEKWQPKSKTRYKICTDPPIDDVRKVATNLRRISGND 160 
WD40-rpts                                                                                      

Query      161 RVLFHYNGHGVPKPTDNGEIWVFNKSFTQYIPLSIFDLQGWLDYPTIYIWETHSAETILHNYRRFGEDQKISWQSRFDRW 240 
WD40-rpts                                                                                      

Query      241 QEEQRNLPPISSKMTDADQAEALGFPEKYPRYNDCIHLAACSAGQWLPMSNPHLPADLFTSCLTTPIRTSLAFHLSHSEH 320 
WD40-rpts                                                                                      

Query      321 RDEYPENILDMIPGNLAERRTVLGELNWIFTAITDTIAFTSIDRDSFQKLFRQDLLLATLFRSFLLAQRVMSKFNVLPVS 400 
WD40-rpts                                                                                      

Query      401 QPPLKDTSMHDLWRCWDQTMDMVLDYCRELIYVKECERALFCGRDVINRSNVFPFLVLIDFEHVLTYNETHQYNTFFTEQ 480 
WD40-rpts                                                                                      

Query      481 LQAFELWLDYGVDEGTPPLQLPMVLQVLLSQAHRVRALRLLARFLDFGRWAIGYSLAVGIFPYVLKLLQSNISDLKISLA 560 
WD40-rpts                                                                                      

Query      561 FIWAKILAVDPSCQMELFNECIDESATQQQSPAQSQQPSVALKPSSMFANHPPPAQLTMDKRALQINTQTGGRFQTNQNQ 640 
WD40-rpts                                                                                      

Query      641 ALDMQLQYAQQQAHQRQMDPSGGQHSPNAQPRQPQPQQPQQLQQQPSQQQQQQSRQPQGIMKPTNAQPQEKKTMLRFQYF 720 
WD40-rpts                                                                                      

Query      721 LQLLGDPEIKPKQKTVAAFVLAQLTSNNFKLAQKELTNKGYMGICTELMVDDTARSVKLLKLWILIGLGRLWSDYDVARW 800 
WD40-rpts                                                                                      

Query      801 QGIRLMAHDKMILELSDESAEVRAAAVFALGSLLRNSSRSNEHASAVEENLAGELCSQCVFDSSVLVREELIVALQWFVF 880 
WD40-rpts                                                                                      

Query      881 DFEKRFVKFLLELSNQIKFKLPRKRNSSENLSEQGLDIAAEMPSNHRRPRAPPVNEFMQPSVIRKKMSTSVFSTAVEETV 960 
WD40-rpts                                                                                      

Query      961 HEDGIGNVYHIAHEAGNRVEQESEDIEYRERAKVQIKHLEAKTFNEAVAKTWLSLLILSLDPIERVARMAQKIVHRVEAG 1040
WD40-rpts                                                                                      

Query     1041 MPEMQANIDNTMAHLSRKMIARKNSKATVEMPRKPVGPSEEVSTLSERIKRNLEVEKVVEMIPESGVSADGIDFTKLNMQ 1120
WD40-rpts                                                                                      

Query     1121 KAKEQRKGGKGGQIKKLQDESKVKFQVGSPGDVNQQHKNALSPGSSFTDETQSSELFSKDDSSDDDENKSANDEKDRATT 1200
WD40-rpts                                                                                      

Query     1201 ASGKTVKGAFRKSDIMDAALMEFTPRRTKAVPGDFAVKEESKTLRTVIENPIVSTQFVAWCSKVFVEPILHVITLDEEKS 1280
WD40-rpts                                                                                      

Query     1281 EDWEHEDEDEFMPEQFREKIKDIQKQDRKMHEEKRARDKKEGKKEKSQEDVVVTTTTISDWAIHAMEGMLQSADIEGRDF 1360
WD40-rpts                                                                                      

Query     1361 QSCKYDECLWRVKLTHPARSLTTSKLRRCMYASDGRLMTIIRQDTDTRSFRRFDLTASNPFCPSYVSQLILINDMSREMV 1440
WD40-rpts                   (____________WD 1____________)          (_________________WD 2_____

Query     1441 IACSTNGVVRIWDPYFLGWCDDYEKPPELVSASFPLESQMKISDETNRCLFDWNQQNGKLLCTGTRSVRIWDAHCEKVCH 1520
WD40-rpts      ____________)   (________________WD 3________________)                          

Query     1521 DVMYSPGSKQQTGPGAKLNTNTLPTAMSGNLDEEGNMVAVGYADGRVDYFDMRMANPKAARCNLAPVNMSKQFNDRPPGI 1600
WD40-rpts                  (_________________WD 4________________)               (_____________

Query     1601 MHLRVNRQGFGTELFAGSQDGSIYKLQLRMFKEATPSIVTPWEYGAHSHMFVHEDSRILASAGGGELAIYDVAQNKLMAR 1680
WD40-rpts      _____WD 5_________________)      (________________WD 6________________)  (______

Query     1681 ILPPGEPNSMRRDKNSSTFGLFSSQRKLSQVQMSGRMSSMSSATVGEDRQPKVISLTMHQMRLLTVAGYDDNTVCVYGSP 1760
WD40-rpts      ___________WD 7________________)  (___________________WD 8___________________)  

Query     1761 KPGLTGHYENTQGASSPPSQSL 1782
WD40-rpts                            

8 WD40-repeats found in QUERY=C10C5.6b (Len=1782):

(Red - Z-score>4.0)

  Rpts  Segment   Boundary  Z-score   Score  P-value  Identities  SS-score
  WD 1:  Seg 11  1374-1403     2.90  234.51  0.04219        7.5%     30.94
  WD 2:  Seg 15  1414-1453     6.07  365.36  0.00074       10.0%     30.84
  WD 3:  Seg 18  1457-1494     4.15  286.08  0.00866       15.0%     20.90
  WD 4:  Seg 23  1533-1571     5.02  322.14  0.00283       17.5%     26.20
  WD 5:  Seg 25  1587-1627     5.30  333.66  0.00198       20.0%     41.39
  WD 6:  Seg 28  1634-1671     4.60  304.54  0.00489       12.5%     42.52
  WD 7:  Seg 31  1674-1712     5.01  321.45  0.00290        7.5%     42.10
  WD 8:  Seg 35  1715-1758     6.04  364.02  0.00077       22.5%     40.87

Multiple sequence alignment of 8 WD40-repeats:

(BLUE - beta-strands, RED - alpha-helices, predicted by PSIPRED)

   WD 1 1374-1403   L----------TH-----PARSLTTSK--LRRCMYASDGRLMTIIRQ
   WD 2 1414-1453   DLTASNPFCPSYV-----SQLILINDM--SREMVIACSTNGVVRIWD
   WD 3 1457-1494   -LGWCDDYEKPPE-----LV-SASFPL--ESQMKISDETNRCLFDWN
   WD 4 1533-1571   -GPGAKLNTNTLP-----TAMSGNLDE--EGNMVAVGYADGRVDYFD
   WD 5 1587-1627   -VNMSKQFNDRPP-----GIMHLRVNRQGFGTELFAGSQDGSIYKLQ
   WD 6 1634-1671   -ATPSIVTPWEYG-----AHSHMFVHE--DSRILASAG-GGELAIYD
   WD 7 1674-1712   -QNKLMARILPPG-----EPNSMRRDK--NSSTFGLFSSQRKLSQVQ
   WD 8 1715-1758   -GRMSSMSSATVGEDRQPKVISLTMHQ--MRLLTVAGYDDNTVCVYG

   WD40 Template    TGECLRTLSGHTS-----GVTSVSFSP--DGKRLVSGSEDGTIKVWD